Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0255.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    25   6.3  
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    25   8.4  

>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -3

Query: 302 LNKLR**LYDISKGEIDLF*TKFYVFYKRARNIENSI 192
           ++K++  L+DI    + LF    + FYKR +N E ++
Sbjct: 748 IDKIKDILFDIHVDNLYLFPQLEHSFYKRKKNYEKAL 784


>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 350 HCTLFKTILKLGYLR*LEDFLNLSIKLRFLY 442
           H T+F  I  LGYL  +   ++LS KL  +Y
Sbjct: 269 HHTVFSIISALGYLGDVSSAVSLSRKLTSVY 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,939,554
Number of Sequences: 5004
Number of extensions: 35666
Number of successful extensions: 57
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)