Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0255.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0068 + 5390004-5390425,5390517-5390949                           27   8.6  

>03_02_0068 + 5390004-5390425,5390517-5390949
          Length = 284

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = -2

Query: 282 IIRYIER*NRLVLNEILCVLQESPEH*KFNY*DVRNGF*HLLTLIVILDGL 130
           ++ Y+ R +R+VL +++C    +P+H  F   D  + +  +  L+ ILD L
Sbjct: 54  VLPYLTRDHRVVLYDLVCAGSVNPDHFDFRRYDNLDAY--VDDLLAILDAL 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,499,044
Number of Sequences: 37544
Number of extensions: 166270
Number of successful extensions: 224
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)