Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0255.Seq
         (598 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF420242-1|AAL16060.1|  826|Drosophila melanogaster RNA-directed...    30   2.7  
U56245-2|AAC47351.1|  524|Drosophila melanogaster kynurenine 3-m...    28   8.4  
AF317319-1|AAK07882.1|  524|Drosophila melanogaster mutant cinna...    28   8.4  
AE013599-495|AAF59196.3|  524|Drosophila melanogaster CG1555-PA ...    28   8.4  

>AF420242-1|AAL16060.1|  826|Drosophila melanogaster RNA-directed
           DNA polymerase protein.
          Length = 826

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 49  FYLYFIQNIDDYSIICF*MSKTREHFKQSIKYYNKS*QVSETVSYVLIIEFSMFR 213
           +Y  FI+N  DYS     + K    F+ S +Y N    + E + Y  ++++  FR
Sbjct: 148 YYRRFIRNFADYSRHITRLCKKNVPFEWSSEYQNAFEYLKENLMYPTLLQYPDFR 202


>U56245-2|AAC47351.1|  524|Drosophila melanogaster kynurenine
           3-monooxygenase protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 65  SKISMITLLFAFKCQRQESTLNNPSSITIRVNKCQKP 175
           S ++ I++  +F+CQR   T+ +P  ++  VN  Q+P
Sbjct: 39  SCLASISIPSSFRCQRASRTVMSPGIVSQEVNGRQEP 75


>AF317319-1|AAK07882.1|  524|Drosophila melanogaster mutant cinnabar
           protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 65  SKISMITLLFAFKCQRQESTLNNPSSITIRVNKCQKP 175
           S ++ I++  +F+CQR   T+ +P  ++  VN  Q+P
Sbjct: 39  SCLASISIPSSFRCQRASRTVMSPGIVSQEVNGRQEP 75


>AE013599-495|AAF59196.3|  524|Drosophila melanogaster CG1555-PA
           protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 65  SKISMITLLFAFKCQRQESTLNNPSSITIRVNKCQKP 175
           S ++ I++  +F+CQR   T+ +P  ++  VN  Q+P
Sbjct: 39  SCLASISIPSSFRCQRASRTVMSPGIVSQEVNGRQEP 75


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,873,777
Number of Sequences: 53049
Number of extensions: 320974
Number of successful extensions: 368
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2420893683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)