Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0255.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83116-6|CAB05565.2|  302|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z81132-11|CAB03426.2|  302|Caenorhabditis elegans Hypothetical p...    29   3.3  

>Z83116-6|CAB05565.2|  302|Caenorhabditis elegans Hypothetical
           protein M01B2.7 protein.
          Length = 302

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = +3

Query: 465 YSYNIKAL--FGVNXSSXKLYAYIHFKIYN 548
           ++Y++ AL  FG+N     LYAY++FK+ N
Sbjct: 158 HAYDMFALSSFGINLFVPPLYAYVYFKVKN 187


>Z81132-11|CAB03426.2|  302|Caenorhabditis elegans Hypothetical
           protein T26E4.15 protein.
          Length = 302

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = +3

Query: 465 YSYNIKAL--FGVNXSSXKLYAYIHFKIYN 548
           ++Y++ AL  FG+N     +YAY++FK+ N
Sbjct: 158 HAYDMFALSSFGINLFVPPIYAYVYFKVKN 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,387,664
Number of Sequences: 27780
Number of extensions: 188828
Number of successful extensions: 351
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)