Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0255.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62050.1 68418.m07788 OXA1 protein (OXA1) identical to AtOXA1...    28   4.1  
At4g21680.1 68417.m03140 proton-dependent oligopeptide transport...    27   7.2  
At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR...    27   9.5  

>At5g62050.1 68418.m07788 OXA1 protein (OXA1) identical to AtOXA1
           [Arabidopsis thaliana] GI:6624207
          Length = 429

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 53  IYILSKISMITLLFAFKCQRQESTLNNPSSITIR 154
           +YIL  I+ +T L   +C  QE    NP + T++
Sbjct: 271 LYILPVITGLTFLITVECNAQEGMEGNPMAGTVK 304


>At4g21680.1 68417.m03140 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 589

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 221 CKTHKISFKTSLFHLSIYRIII 286
           CK H  +FKT LF+LS+Y I +
Sbjct: 138 CKPHS-TFKTVLFYLSVYLIAL 158


>At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1039

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 250 CFKRNFMCFTREPGTLKIQ-LLGRKKRFLTL 161
           C   N   FTRE G +KI+ +L  KK FL +
Sbjct: 263 CNDENAKLFTREAGAMKIKGILKHKKFFLVI 293


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,389,811
Number of Sequences: 28952
Number of extensions: 161009
Number of successful extensions: 238
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)