Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0254.Seq
         (449 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|R...    56   3e-07
UniRef50_A5K7A2 Cluster: Putative uncharacterized protein; n=3; ...    32   5.0  
UniRef50_Q99GT5 Cluster: ORF131; n=3; Nucleopolyhedrovirus|Rep: ...    31   8.8  

>UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|Rep:
            Sericin 1 precursor - Bombyx mori (Silk moth)
          Length = 1186

 Score = 56.4 bits (130), Expect = 3e-07
 Identities = 23/23 (100%), Positives = 23/23 (100%)
 Frame = -2

Query: 253  GKICLCFENIFDIPYHLRKNIGV 185
            GKICLCFENIFDIPYHLRKNIGV
Sbjct: 1164 GKICLCFENIFDIPYHLRKNIGV 1186



 Score = 44.4 bits (100), Expect = 0.001
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = -3

Query: 306  VSRSHHSGVNRLLHKPGQEK 247
            VSRSHHSGVNRLLHKPGQ K
Sbjct: 1146 VSRSHHSGVNRLLHKPGQGK 1165


>UniRef50_A5K7A2 Cluster: Putative uncharacterized protein; n=3;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium vivax
          Length = 3599

 Score = 32.3 bits (70), Expect = 5.0
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -3

Query: 303  SRSHHSGVNRLLHKPGQEKYAFASKTYSIFLTISVRISVFNTTKHD 166
            ++  H GVN+ L    +EKY F + T S+ LT +    V N  K D
Sbjct: 986  NKIEHDGVNKSLDNLAKEKYKFDNNTNSLELTDAESKKVHNEHKDD 1031


>UniRef50_Q99GT5 Cluster: ORF131; n=3; Nucleopolyhedrovirus|Rep:
           ORF131 - Helicoverpa zea SNPV
          Length = 192

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 140 LKHYKEYSKSCLVVLNTDILTEMVRNIEYVFE 235
           L H +  +K  +V LN D + E V+NI++VFE
Sbjct: 149 LNHLRSINKQKIVFLNGDHVEEYVQNIKHVFE 180


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 369,330,601
Number of Sequences: 1657284
Number of extensions: 6772618
Number of successful extensions: 12434
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12426
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)