Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0254.Seq
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0952 + 12666750-12666777,12666965-12667185,12669464-126696...    27   5.3  
01_03_0281 - 14570635-14574633                                         27   9.2  

>03_02_0952 +
           12666750-12666777,12666965-12667185,12669464-12669649,
           12670147-12670212,12670335-12670427,12670528-12670659,
           12670794-12670895,12670993-12671070,12671148-12671219,
           12672185-12672292,12672368-12672465,12672904-12672964,
           12673058-12673120,12673228-12673284,12673571-12673729,
           12674310-12674441,12674516-12674602,12674667-12674738,
           12675899-12675985,12676052-12676427,12676727-12676788,
           12676946-12677014,12677096-12677142,12677189-12677342,
           12677874-12677999
          Length = 911

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 273 LLHKPGQEKYAFASKTYSIFLTISVRISVFNTTKHDLEY 157
           L H P  ++YA A +T  +F  ++  + ++   K +LEY
Sbjct: 294 LTHMPQHKQYAIAMETLQVFAPLAKLLGMYR-IKSELEY 331


>01_03_0281 - 14570635-14574633
          Length = 1332

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 7   LSRQHNYIFFLPGTKPGLFMYAD 75
           ++  HNYI FLP T   LF+ +D
Sbjct: 508 IAEGHNYIEFLPNTVRHLFLCSD 530


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,609,327
Number of Sequences: 37544
Number of extensions: 177187
Number of successful extensions: 304
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)