Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0254.Seq
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18654| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_2986| Best HMM Match : Tis11B_C (HMM E-Value=6.6)                   28   4.1  
SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.2  
SB_44568| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_18654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 392

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 285 GVNRLLHKPGQEKYAFASKTYSIFLTISVRISVFNTTKHDLEYSL 151
           G + L    G   YA+ +++   FLT      VFN+T  DL+  L
Sbjct: 191 GQDYLKGMAGAANYAWVNRSSMTFLTRQAFAKVFNSTPDDLDMHL 235


>SB_2986| Best HMM Match : Tis11B_C (HMM E-Value=6.6)
          Length = 308

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 282 VNRLLHKPGQEKYAFASKTYSIFLTISVRISVFNTTKHDLEYS 154
           V+ LL K  +E+Y + +K  ++   I    +  N  KH+L+YS
Sbjct: 49  VDNLLKKLVKEEYEYTNKIVTLGTNICDFNNTSNLKKHELDYS 91


>SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 392 RPGQAQPLQAVLLPRXVQVHRTLPPLRLVFPGVI 291
           RP  A P     LP+   V R LP L  VFPG++
Sbjct: 322 RPATAPPPVFRGLPQLPPVFRCLPQLPPVFPGLL 355


>SB_44568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 826

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 228 FSKQRHIFPDQACVKVCSRLNDDSW 302
           + K+R I PD  CV+   RL+   W
Sbjct: 421 YGKRRFISPDDVCVRTYERLDYFQW 445


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,686,964
Number of Sequences: 59808
Number of extensions: 221100
Number of successful extensions: 317
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)