Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0254.Seq
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022971-13|AAG23979.1|  325|Caenorhabditis elegans Serpentine r...    28   3.6  
Z77133-3|CAB00868.2|  149|Caenorhabditis elegans Hypothetical pr...    27   6.3  

>AF022971-13|AAG23979.1|  325|Caenorhabditis elegans Serpentine
          receptor, class h protein247 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 11 LGNTITFFFFPVQNRGFLCMLIKVKQR 91
          + N ITFF  PV   G  C+L K  +R
Sbjct: 19 ISNVITFFEIPVCTFGAYCILFKTPER 45


>Z77133-3|CAB00868.2|  149|Caenorhabditis elegans Hypothetical
           protein K03A11.5 protein.
          Length = 149

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 307 CFQESSFRREQTFTQAWSGKICLCFENIFDIPYHLRKNI 191
           C Q     RE  F+ A     C+C  N  D PY + KN+
Sbjct: 15  CNQLKCKNREPDFSNA--NTTCVCHHNPSDYPYDICKNL 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,742,684
Number of Sequences: 27780
Number of extensions: 170492
Number of successful extensions: 294
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)