Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0253.Seq
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   2.0  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    22   2.7  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   4.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.2  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   8.1  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   8.1  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 318 GGVAXSDDVNDISSAAQEILSTGXSSSXAEPGSDISSSG 434
           GG+          SAA  I S+G +S  A P    +SSG
Sbjct: 4   GGIYEESPPPAPQSAATPISSSGMTSPAAAPPPATTSSG 42


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 34  SGAMNEESAYIGDNCLSTPADTEENSPQNDQD 129
           +G  N +++ + D   S  A   ENS   D D
Sbjct: 84  NGDTNGDTSQVDDQNESLEASVNENSKNGDDD 115


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 308 IFIHCT*FIILNAWCSF 258
           IFI C  F ++  W SF
Sbjct: 132 IFITCELFFVILLWISF 148


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 353  NVVDIITAGNPSFSYIFIHCT 291
            NVVDI+T   P+ S   +  T
Sbjct: 1335 NVVDIVTTAKPAQSTTSVSTT 1355


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 270 LVLLQLTYTTIC 235
           LV+L  TYT+IC
Sbjct: 216 LVVLIFTYTSIC 227


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 279 DDESSTMDEDIAEG 320
           DDE+ T+D+D  +G
Sbjct: 38  DDENITVDDDDTDG 51


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,539
Number of Sequences: 336
Number of extensions: 1291
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)