Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0253.Seq
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 34 0.010
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 32 0.042
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 29 0.39
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 27 1.2
SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual 26 2.7
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 26 2.7
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 26 2.7
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 3.6
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 26 3.6
SPBC21B10.12 |rec6||meiotic recombination protein Rec6|Schizosac... 25 4.8
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 6.3
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 6.3
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 25 8.4
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb... 25 8.4
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 25 8.4
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 25 8.4
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 34.3 bits (75), Expect = 0.010
Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Frame = +1
Query: 19 IDETASGAMNEESAYIGDNCLSTPADTEENSP--QNDQDNQLDSMIKEPESEEAEGLGDA 192
+D+T+ +NEESAY+ + EE +P + + +L+++++E E ++ + +
Sbjct: 1051 LDQTSQ--LNEESAYLEKRIQTLERSLEEVTPIWKKQWERELNAIVQEQEFLDSHTVLIS 1108
Query: 193 EESPDQSISSAILPTDSGVGELKEHQAFK 279
+ D S S +L S + EL+ + K
Sbjct: 1109 DLKRDLSALSTVLSNVSAIAELQAKSSIK 1137
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 32.3 bits (70), Expect = 0.042
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +1
Query: 22 DETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLDSMIKEPESEEAEGLGDAEES 201
DE+ S + ES+ ++ S+ +D+E S D D+ S E ES + S
Sbjct: 110 DESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSS 169
Query: 202 PDQSISSA 225
+S SS+
Sbjct: 170 SSESESSS 177
Score = 30.7 bits (66), Expect = 0.13
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +1
Query: 22 DETASGAMNEESAYIGDN-CLSTPADTEENSPQNDQDNQLDSMIKEPE--SEEAEGLGDA 192
D ++S + +E + DN S+ +D+E S D D+ S E E S++++ ++
Sbjct: 217 DSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNS 276
Query: 193 EESPDQSISSA 225
+S D S S +
Sbjct: 277 SDSEDDSSSDS 287
Score = 30.7 bits (66), Expect = 0.13
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +1
Query: 16 DIDETASGAMNE-ESAYIGDNCLSTPADTEENSPQNDQDNQLDSMIKEPESEEAEGLGDA 192
D D ++S + +E ES+ + S+ +D+E S D D+ +S E +S ++
Sbjct: 233 DNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSES 292
Query: 193 EESPDQSISSA 225
E S + S S++
Sbjct: 293 ESSSEDSDSTS 303
Score = 29.9 bits (64), Expect = 0.22
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 22 DETASGAMNEESAYIGDN-CLSTPADTEENSPQNDQDNQLDSMIKEPESEEAEGLGDAEE 198
D ++S + +E + DN S+ +D+E S D D+ S E ES +
Sbjct: 163 DSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSS 222
Query: 199 SPDQSISSA 225
S +S SS+
Sbjct: 223 SSSESESSS 231
Score = 29.1 bits (62), Expect = 0.39
Identities = 16/75 (21%), Positives = 33/75 (44%)
Frame = +1
Query: 1 AEDXMDIDETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLDSMIKEPESEEAEG 180
+E + +++S + + ES + S+ + + S + +DN S + ESE +
Sbjct: 137 SESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSE 196
Query: 181 LGDAEESPDQSISSA 225
D+ S S S +
Sbjct: 197 DSDSSSSSSDSESES 211
Score = 29.1 bits (62), Expect = 0.39
Identities = 16/75 (21%), Positives = 33/75 (44%)
Frame = +1
Query: 1 AEDXMDIDETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLDSMIKEPESEEAEG 180
+E + +++S + + ES + S+ + + S + +DN S + ESE +
Sbjct: 191 SESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSE 250
Query: 181 LGDAEESPDQSISSA 225
D+ S S S +
Sbjct: 251 DSDSSSSSSDSESES 265
Score = 28.7 bits (61), Expect = 0.51
Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +1
Query: 1 AEDXMDIDETASGAMNEESAYIGDNCLSTPA-DTEENSPQNDQDNQLDSMIKEPESEEAE 177
+ + D ++S + +E S+ D+ S+ + ++E +S ND + E SE+++
Sbjct: 140 SSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSD 199
Query: 178 GLGDAEESPDQSIS 219
+ +S +S S
Sbjct: 200 SSSSSSDSESESSS 213
Score = 28.7 bits (61), Expect = 0.51
Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +1
Query: 1 AEDXMDIDETASGAMNEESAYIGDNCLSTPA-DTEENSPQNDQDNQLDSMIKEPESEEAE 177
+ + D ++S + +E S+ D+ S+ + ++E +S ND + E SE+++
Sbjct: 194 SSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSD 253
Query: 178 GLGDAEESPDQSIS 219
+ +S +S S
Sbjct: 254 SSSSSSDSESESSS 267
Score = 27.1 bits (57), Expect = 1.6
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +3
Query: 270 SVQDDESSTMDEDIAEGGVAXSDD-VNDISSAAQEILSTGXSSSXAEPGSDISSSGQ 437
S + ESS+ D D + DD +D S + E S S+ + SD SSS +
Sbjct: 259 SDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDSTSSSSDSDSSSSSE 315
Score = 24.6 bits (51), Expect = 8.4
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +3
Query: 258 EGAPSVQDDESSTMDEDIAEGGVAXSDDVNDISSAAQEILSTGXSSSXAEPGSDISSS 431
E S + ESS+ D D + + + S + S S S +E GSD SSS
Sbjct: 111 ESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSE-GSDSSSS 167
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 29.1 bits (62), Expect = 0.39
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 100 EENSPQNDQDNQLDSMIKEP-ESEEAEGLGDAEESPDQSISSAILPTDSGVGELKE 264
+E+ Q + N + KE E +++E D +E+ + ISS ++P D + L E
Sbjct: 317 KEHPIQLEDSNNSAELAKETKEEDDSENSVDKKENEEDIISSTMMPQDEVLANLTE 372
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 27.5 bits (58), Expect = 1.2
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +1
Query: 4 EDXMDIDETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLDSMIKEPESEEAEGL 183
E+ + +E + + ES ++ +++EE S ++++ S +K+PE EEA+
Sbjct: 91 EEETESEEDSEVSDESESESESESESEEESESEEESDESERSGP-SSFLKKPEKEEAKPA 149
Query: 184 G 186
G
Sbjct: 150 G 150
>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 296
Score = 26.2 bits (55), Expect = 2.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 13 MDIDETASGAMNEESAYIGDNCLSTPADTEENS 111
MD+ +G + EES DN + P DT++N+
Sbjct: 36 MDVQSLLTGEL-EESYTKADNSIVVPTDTQKNT 67
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 26.2 bits (55), Expect = 2.7
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Frame = +1
Query: 88 PADTEENSPQNDQDNQLDSMIKEPESEEA--EGLGDAEESPDQS---ISSAILPTD 240
P++ E+N + Q + + I EPE +E E D EESP +S IS ++ P +
Sbjct: 13 PSEKEDNVER--QTKKYNFEIDEPEEQEKKDEKEDDKEESPSKSLEEISQSVSPVE 66
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 26.2 bits (55), Expect = 2.7
Identities = 24/85 (28%), Positives = 40/85 (47%)
Frame = +1
Query: 94 DTEENSPQNDQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGELKEHQA 273
+ E+ QND +NQ ++KE +AE++P + LP GV L E +A
Sbjct: 242 EEEDMMHQNDPNNQSPKLLKEFRKLHEP---NAEDAPSRDYIP--LPPHKGVDILSEVEA 296
Query: 274 FKMMNQVQWMKI*LKEGLPAVMMST 348
K + + + + + LP+V M T
Sbjct: 297 VK--DWSKRLHLGPRASLPSVCMYT 319
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 25.8 bits (54), Expect = 3.6
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 169 EAEGLGDAEESPDQSISSAILPTDSGVGELKEH 267
E EG+ ++ P SI S IL D GV + +EH
Sbjct: 527 EREGVNRVKDFP--SILSTILSVDEGVRQHREH 557
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 3.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 109 SPQNDQDNQLDSMIKEPESEEAEGLGDAEESPDQ 210
S +N+ LDS E +SEE G G+ P+Q
Sbjct: 170 SERNESSLSLDSGESEKKSEEDNGNGEQNYIPEQ 203
>SPBC21B10.12 |rec6||meiotic recombination protein
Rec6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 25.4 bits (53), Expect = 4.8
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +1
Query: 91 ADTEENSPQNDQ----DNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDS 243
AD EEN ++ D+QL +S E + EE D+ +S A++ TD+
Sbjct: 112 ADDEENKQYSESSLLDDSQLLCSSPPVDSTEEARTCNVEEDQDEILSVALVTTDT 166
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.0 bits (52), Expect = 6.3
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +3
Query: 306 DIAEGGVAXSDDVNDISSAAQEILSTGXSSSXAEPGSDISSS 431
+I EG A S + SS++ + ST SSS A P + SSS
Sbjct: 109 NIVEG--AASSSSSSSSSSSSLVSSTTSSSSSATPSTTSSSS 148
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.0 bits (52), Expect = 6.3
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Frame = +1
Query: 16 DIDETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLDSMI----KEPES------ 165
D E A NE+ + D+ +P DT N ++ +N++D++ KE E
Sbjct: 45 DDSEAAKITTNEKQSSPVDSHNESPNDTTINKGEDGNENEVDNVNNNDKKEDEDNVEENE 104
Query: 166 EEAEGLGDAEESPDQSISSAILPTDSGVGELK 261
EEA+ + EE + +SG G K
Sbjct: 105 EEADANEEEEEDEEDDEEDEEDEDESGGGRRK 136
>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 24.6 bits (51), Expect = 8.4
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 288 SSTMDEDIAEGGVAXSDDVNDISSAAQEILSTGXSSSXAEPGSDISS 428
S+T++ +I + ++ S SS+ ST SSS GS ISS
Sbjct: 410 STTINTNIVQATISQSSTSG--SSSGSSSASTTASSSSVSSGSSISS 454
>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 202
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +1
Query: 124 QDNQLDSMI---KEPESEEAEGLGDAEESPDQSISS 222
Q N L S++ PES+ EG+ E+P S S+
Sbjct: 162 QMNHLQSILHPPSNPESDSEEGIASEGENPSSSSST 197
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 24.6 bits (51), Expect = 8.4
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +1
Query: 43 MNEESAYIG--DNCLSTPADTEENSPQNDQDNQLDSMIKEPESEEAE 177
+NE+ Y ++ LST D+EE S +D ++ + EP +++AE
Sbjct: 222 LNEDPEYDSAEEDYLST--DSEEFSEDSDNSSEENKDTNEPSTKDAE 266
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 24.6 bits (51), Expect = 8.4
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +1
Query: 100 EENSPQNDQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGELKEH 267
E+ P+N+ + S +S A + A E DQ +S LP+ +G+ +L E+
Sbjct: 727 EQKKPENNVLTKPFSFAPSDKSMFAANIPSAGEGLDQQKTSKALPS-TGITKLSEN 781
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,506,221
Number of Sequences: 5004
Number of extensions: 23477
Number of successful extensions: 136
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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