SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0253.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-10|CAB82002.1|  286|Caenorhabditis elegans Hypothetical...    40   0.001
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n...    36   0.012
U28993-8|AAK31496.1|  632|Caenorhabditis elegans C.elegans homeo...    32   0.27 
U28993-7|AAL27244.1|  641|Caenorhabditis elegans C.elegans homeo...    32   0.27 
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    31   0.46 
Z68748-12|CAN86588.1|  792|Caenorhabditis elegans Hypothetical p...    31   0.61 
Z68748-10|CAL36500.1|  789|Caenorhabditis elegans Hypothetical p...    31   0.61 
Z68748-9|CAL36499.1|  796|Caenorhabditis elegans Hypothetical pr...    31   0.61 
Z49911-7|CAA90129.1|  861|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AC090999-25|AAK26157.2|  921|Caenorhabditis elegans Hypothetical...    28   3.3  
AC024807-1|AAF59529.5|  704|Caenorhabditis elegans Hypothetical ...    28   3.3  
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n...    28   4.3  
L15188-6|AAA27950.2| 1132|Caenorhabditis elegans Gex interacting...    28   4.3  
L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting...    28   4.3  
L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting...    28   4.3  
Z83122-10|CAB05601.1|  896|Caenorhabditis elegans Hypothetical p...    27   5.7  
Z83122-9|CAB05598.1|  906|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z66498-4|CAA91292.1|  142|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U00052-3|AAK21426.1|  308|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical ...    27   5.7  
AC024876-5|AAF60891.2|  221|Caenorhabditis elegans Ubiquitin con...    27   5.7  
Z81068-6|CAB02986.1|  725|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U41510-8|AAK39385.1|  493|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z48009-12|CAA88089.1| 1137|Caenorhabditis elegans Hypothetical p...    27   10.0 
Z48007-3|CAA88054.1| 1137|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z48007-2|CAA88053.2| 1118|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z22178-4|CAA80156.1|  359|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U55857-6|AAA98032.2|  206|Caenorhabditis elegans Rnp (rrm rna bi...    27   10.0 
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical...    27   10.0 

>AL132902-10|CAB82002.1|  286|Caenorhabditis elegans Hypothetical
           protein Y71A12B.11 protein.
          Length = 286

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 26/88 (29%), Positives = 43/88 (48%)
 Frame = +1

Query: 1   AEDXMDIDETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLDSMIKEPESEEAEG 180
           +ED   ++ET + A+N+          S   + EE+   +D D+  DS     E EEAEG
Sbjct: 186 SEDEEYVEETCTDALNQLEPESDAADESVEEEEEEDEDSDDSDDSDDS-----EEEEAEG 240

Query: 181 LGDAEESPDQSISSAILPTDSGVGELKE 264
                ++P +  +S+   TD  +GEL +
Sbjct: 241 --STAQAPAEKANSSTTTTDQNIGELSD 266


>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 20
           protein.
          Length = 1254

 Score = 36.3 bits (80), Expect = 0.012
 Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
 Frame = +1

Query: 22  DETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLDSMIKEPESEEAEGLGDAEES 201
           D  ASG  NEE     D  +    + EE     D      S  K+ E  E E L   EE 
Sbjct: 123 DTVASGKTNEEDRKSIDTSVDLIQEREEQEDTGDNQISQQSSSKDHECPEREDLSIHEEP 182

Query: 202 PDQSISSAILP-TDSGV 249
            +   +  +LP T SG+
Sbjct: 183 TNSPTNDGVLPSTSSGI 199


>U28993-8|AAK31496.1|  632|Caenorhabditis elegans C.elegans homeobox
           protein 38,isoform a protein.
          Length = 632

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 106 NSPQNDQDNQLDSMI-KEPESEEAEGLGDAEESPDQSISSAILPTDSGVGELKEHQAFK 279
           N   ++ D +LD +   E   EE   +GD EE  ++  +  ILPT   V EL+E    K
Sbjct: 558 NGDSHEDDEELDELNDSELAYEEDVEIGDEEEEDEEQANGDILPTPK-VEELEEKTVIK 615


>U28993-7|AAL27244.1|  641|Caenorhabditis elegans C.elegans homeobox
           protein 38,isoform b protein.
          Length = 641

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 106 NSPQNDQDNQLDSMI-KEPESEEAEGLGDAEESPDQSISSAILPTDSGVGELKEHQAFK 279
           N   ++ D +LD +   E   EE   +GD EE  ++  +  ILPT   V EL+E    K
Sbjct: 567 NGDSHEDDEELDELNDSELAYEEDVEIGDEEEEDEEQANGDILPTPK-VEELEEKTVIK 624


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
 Frame = +1

Query: 1    AEDXMDIDETASGAMNEESAYIGDNCLSTPADTEE--NSPQNDQDNQLDSMIKEPESEEA 174
            AED  DID+   G  N+     G++      D E+     + + + QLD  + + E +E 
Sbjct: 3674 AEDLQDIDKNEKGDQND-----GEDESDEEPDVEDQMGDVEEEDEKQLDPKMWDEEEKEE 3728

Query: 175  EGLGDAEESPDQSISSAILPTDSGVGELKEHQAFK 279
            +   D +++ DQ   +A   TD  V +  + QA K
Sbjct: 3729 Q---DQQKNMDQEQEAAEDQTDEMVAKEDDAQAPK 3760


>Z68748-12|CAN86588.1|  792|Caenorhabditis elegans Hypothetical
           protein F13H10.4c protein.
          Length = 792

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +1

Query: 85  TPADTEENSPQNDQDNQLDSMIKEPESEEAEGLGD-AEESPDQSISSAILP 234
           T AD +  +   ++ N  DS++K+  SEEA+G  D  + S D ++S    P
Sbjct: 567 TDADYQRTAKAMEELNNFDSLVKDHWSEEAQGFFDYGKHSFDVALSPVPTP 617


>Z68748-10|CAL36500.1|  789|Caenorhabditis elegans Hypothetical
           protein F13H10.4b protein.
          Length = 789

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +1

Query: 85  TPADTEENSPQNDQDNQLDSMIKEPESEEAEGLGD-AEESPDQSISSAILP 234
           T AD +  +   ++ N  DS++K+  SEEA+G  D  + S D ++S    P
Sbjct: 564 TDADYQRTAKAMEELNNFDSLVKDHWSEEAQGFFDYGKHSFDVALSPVPTP 614


>Z68748-9|CAL36499.1|  796|Caenorhabditis elegans Hypothetical
           protein F13H10.4a protein.
          Length = 796

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +1

Query: 85  TPADTEENSPQNDQDNQLDSMIKEPESEEAEGLGD-AEESPDQSISSAILP 234
           T AD +  +   ++ N  DS++K+  SEEA+G  D  + S D ++S    P
Sbjct: 571 TDADYQRTAKAMEELNNFDSLVKDHWSEEAQGFFDYGKHSFDVALSPVPTP 621


>Z49911-7|CAA90129.1|  861|Caenorhabditis elegans Hypothetical
           protein M28.9 protein.
          Length = 861

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 79  LSTPADTEENSPQNDQDNQLDSMIKEPESEEAEGLGDAEESPDQSI 216
           LST ADT   S + D  N++  +IK     ++ G G   +S  +SI
Sbjct: 297 LSTAADTVMGSSELDSVNKMVDVIKAEIKSQSRGAGSVIDSAQKSI 342


>AC090999-25|AAK26157.2|  921|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.18 protein.
          Length = 921

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/74 (21%), Positives = 33/74 (44%)
 Frame = +1

Query: 4   EDXMDIDETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLDSMIKEPESEEAEGL 183
           E  + ++++ +   +EE     ++     A   EN  +ND+   ++  I  P  EEAE +
Sbjct: 630 ERHVALEKSKAEEKSEEDGEKMEDSPKKTAKIPENPAENDEFPDIEVKIARPSGEEAEEM 689

Query: 184 GDAEESPDQSISSA 225
              E  P   + ++
Sbjct: 690 TLIEVGPKNPVKNS 703


>AC024807-1|AAF59529.5|  704|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.1 protein.
          Length = 704

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +1

Query: 25  ETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLD--SMIKEPESEEAEGLGDAEE 198
           E+ + A N+E+  I     S+P  T E+ P  D     D  S I+   S+ +E L ++ +
Sbjct: 563 ESENPAENDENPEISKIMTSSPPGTPESEPIADDSESEDEKSTIRYIPSKNSESLQNSMD 622

Query: 199 SPD 207
           S D
Sbjct: 623 SSD 625


>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
            isoform a protein.
          Length = 1702

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = +1

Query: 25   ETASGAMNEESAYIGDNCLSTPADTEENSPQ-NDQDNQLDSMIKEPESEEAEGLGDAEES 201
            ++ S A++E +  I D   + PAD E+ + Q  D ++Q +S  ++PE +    +   E+S
Sbjct: 1129 QSRSVALHERAQMIVDFAKTQPADQEDQTVQLQDHEHQYNSQ-QQPEYQHQPLVQMQEQS 1187

Query: 202  PDQ 210
             +Q
Sbjct: 1188 NEQ 1190


>L15188-6|AAA27950.2| 1132|Caenorhabditis elegans Gex interacting
           protein protein8, isoform a protein.
          Length = 1132

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
 Frame = +1

Query: 16  DIDETAS-GAMNEESAYIGDNCLSTPADTEENSPQ-NDQD-NQLDSMIKEPESEEAEGLG 186
           D DE AS G+  ++S    D    +PAD E +SP+  DQD +Q     ++ + EE E + 
Sbjct: 578 DNDEDASRGSRGKDSKAPSDRD-GSPADMEGDSPEGQDQDADQDQDQDQDVDEEEEEVIV 636

Query: 187 DAEESPDQSISS 222
              +SP +++ S
Sbjct: 637 RDIDSPVKTLLS 648


>L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting
           protein protein8, isoform b protein.
          Length = 1780

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
 Frame = +1

Query: 16  DIDETAS-GAMNEESAYIGDNCLSTPADTEENSPQ-NDQD-NQLDSMIKEPESEEAEGLG 186
           D DE AS G+  ++S    D    +PAD E +SP+  DQD +Q     ++ + EE E + 
Sbjct: 578 DNDEDASRGSRGKDSKAPSDRD-GSPADMEGDSPEGQDQDADQDQDQDQDVDEEEEEVIV 636

Query: 187 DAEESPDQSISS 222
              +SP +++ S
Sbjct: 637 RDIDSPVKTLLS 648


>L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting
           protein protein8, isoform c protein.
          Length = 1697

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
 Frame = +1

Query: 16  DIDETAS-GAMNEESAYIGDNCLSTPADTEENSPQ-NDQD-NQLDSMIKEPESEEAEGLG 186
           D DE AS G+  ++S    D    +PAD E +SP+  DQD +Q     ++ + EE E + 
Sbjct: 578 DNDEDASRGSRGKDSKAPSDRD-GSPADMEGDSPEGQDQDADQDQDQDQDVDEEEEEVIV 636

Query: 187 DAEESPDQSISS 222
              +SP +++ S
Sbjct: 637 RDIDSPVKTLLS 648


>Z83122-10|CAB05601.1|  896|Caenorhabditis elegans Hypothetical
           protein R11A5.1b protein.
          Length = 896

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 94  DTEENSPQNDQD-NQLDSMIKEPESEEAEGLGDAEESPDQS 213
           D EE+  + ++D ++ D   +E ESEE E   + EES ++S
Sbjct: 582 DEEEDEDEEEEDEDEEDEEEEENESEEEEEDDEDEESEEES 622


>Z83122-9|CAB05598.1|  906|Caenorhabditis elegans Hypothetical
           protein R11A5.1a protein.
          Length = 906

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 94  DTEENSPQNDQD-NQLDSMIKEPESEEAEGLGDAEESPDQS 213
           D EE+  + ++D ++ D   +E ESEE E   + EES ++S
Sbjct: 592 DEEEDEDEEEEDEDEEDEEEEENESEEEEEDDEDEESEEES 632


>Z66498-4|CAA91292.1|  142|Caenorhabditis elegans Hypothetical
           protein M195.4 protein.
          Length = 142

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 94  DTEENSPQNDQDNQLDSMIKEPESEEAEGLGDAEESPDQS 213
           D ++  P+N++    D   K P +  AEG G AE+  D+S
Sbjct: 28  DVKKEEPKNEEKKPGDEN-KNPAAVGAEGAGAAEKPQDKS 66


>U00052-3|AAK21426.1|  308|Caenorhabditis elegans Hypothetical
           protein K02F3.4 protein.
          Length = 308

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +1

Query: 7   DXMDIDETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLDSMIKE 156
           D +D+D   S  +    AYI D+ +++P++    SP     + +D    +
Sbjct: 160 DFLDLDSLMSCDITSLDAYIHDDSIASPSNASHISPPASDIDPVDEFFPQ 209


>AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical
            protein C35E7.5a protein.
          Length = 1262

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 22/73 (30%), Positives = 35/73 (47%)
 Frame = +1

Query: 22   DETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLDSMIKEPESEEAEGLGDAEES 201
            D+T S     E + I DNC      T       + DN LD + +E +S E     +AE+ 
Sbjct: 1095 DDTQSTTTALEPSDIEDNCDVESTTTAVEPLDFEDDNSLD-ITQESDSLELMEHVEAEDD 1153

Query: 202  PDQSISSAILPTD 240
              +S ++A+ P+D
Sbjct: 1154 -TKSTTTALEPSD 1165


>AC024876-5|AAF60891.2|  221|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein8 protein.
          Length = 221

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 82  STPADTEENSPQNDQDNQLDSMIKEPESE 168
           STP++  +  PQ+D D    SM +  ESE
Sbjct: 169 STPSEHYDGHPQDDDDESCSSMSEFDESE 197


>Z81068-6|CAB02986.1|  725|Caenorhabditis elegans Hypothetical
           protein F25H5.5 protein.
          Length = 725

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
 Frame = +1

Query: 22  DETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLDSMI------KEPESEEAEGL 183
           D   SG + E+S  I + C  +   TE+     ++  +L  ++       + E+EEAE  
Sbjct: 353 DVFGSGTL-EDSETIKEICEKSGEFTEKIETVLEEKTELKRVVLSDGEDSDEEAEEAEEE 411

Query: 184 GDAEESPDQ 210
           GD EE P++
Sbjct: 412 GDDEEEPEE 420


>U41510-8|AAK39385.1|  493|Caenorhabditis elegans Hypothetical
           protein ZC449.5 protein.
          Length = 493

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = +1

Query: 82  STPADTEENSPQNDQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGE 255
           STP   E      ++  + D   K+ + ++ +   D+EE  D   S +   +DS   E
Sbjct: 284 STPTSEESTEQSTEKPKKEDKKDKKDKKDKKQKKEDSEEDDDDKKSKSSSSSDSKTDE 341


>Z48009-12|CAA88089.1| 1137|Caenorhabditis elegans Hypothetical
           protein AH6.1 protein.
          Length = 1137

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 368 LCGTTNVVDIITAGNPSFSYIFIHC 294
           LC   ++ DI++ GN S  Y F+ C
Sbjct: 638 LCSRGSLQDILSRGNFSMDYFFMFC 662


>Z48007-3|CAA88054.1| 1137|Caenorhabditis elegans Hypothetical
           protein AH6.1 protein.
          Length = 1137

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 368 LCGTTNVVDIITAGNPSFSYIFIHC 294
           LC   ++ DI++ GN S  Y F+ C
Sbjct: 638 LCSRGSLQDILSRGNFSMDYFFMFC 662


>Z48007-2|CAA88053.2| 1118|Caenorhabditis elegans Hypothetical
           protein R134.2 protein.
          Length = 1118

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 368 LCGTTNVVDIITAGNPSFSYIFIHC 294
           LC   ++ DI++ GN S  Y F+ C
Sbjct: 639 LCSRGSLQDILSRGNFSMDYFFMFC 663


>Z22178-4|CAA80156.1|  359|Caenorhabditis elegans Hypothetical
           protein F54C8.4 protein.
          Length = 359

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 73  NCLSTPADTEENSPQNDQDNQLDSMIKEPESEEAEGLGDAEES 201
           N  +TP +  E +PQ +++ + D    E E+E   G G +  S
Sbjct: 277 NGANTPPEPSEGTPQEEEEFEEDFEEIEEETETEPGKGQSVSS 319


>U55857-6|AAA98032.2|  206|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 2 protein.
          Length = 206

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 139 DSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGELKE 264
           + ++K+P+S + E  GD    P++ +    LP DS   E+ E
Sbjct: 109 EKILKKPKSRKKENGGDGPAPPNKILFCTNLP-DSATAEMLE 149


>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
           protein Y75B8A.13 protein.
          Length = 1420

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +1

Query: 88  PADTEENSPQNDQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAI-LPTDS 243
           P   +E+  QND    LD   +E   +  E + D   + D+S   A+ LP D+
Sbjct: 374 PGSRDES--QNDVTASLDGSTEEASQDHTEFVADTPGAGDESTDDALNLPMDT 424



 Score = 26.6 bits (56), Expect = 10.0
 Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +1

Query: 1   AEDXMD-IDETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLDSMIKEPESEEAE 177
           +ED  D +D   +G  +++   + ++  S+ +D  + S  N   ++     ++ + E  E
Sbjct: 598 SEDKDDSMDSAEAGERSDDPQDLRES--SSSSDESDESEGNSSPSEAPGSPRQQDPEPME 655

Query: 178 GLGDAEESP 204
             G+A E+P
Sbjct: 656 AFGEASEAP 664


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,404,768
Number of Sequences: 27780
Number of extensions: 134874
Number of successful extensions: 650
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -