BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0253.Seq
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132902-10|CAB82002.1| 286|Caenorhabditis elegans Hypothetical... 40 0.001
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n... 36 0.012
U28993-8|AAK31496.1| 632|Caenorhabditis elegans C.elegans homeo... 32 0.27
U28993-7|AAL27244.1| 641|Caenorhabditis elegans C.elegans homeo... 32 0.27
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 31 0.46
Z68748-12|CAN86588.1| 792|Caenorhabditis elegans Hypothetical p... 31 0.61
Z68748-10|CAL36500.1| 789|Caenorhabditis elegans Hypothetical p... 31 0.61
Z68748-9|CAL36499.1| 796|Caenorhabditis elegans Hypothetical pr... 31 0.61
Z49911-7|CAA90129.1| 861|Caenorhabditis elegans Hypothetical pr... 30 1.1
AC090999-25|AAK26157.2| 921|Caenorhabditis elegans Hypothetical... 28 3.3
AC024807-1|AAF59529.5| 704|Caenorhabditis elegans Hypothetical ... 28 3.3
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n... 28 4.3
L15188-6|AAA27950.2| 1132|Caenorhabditis elegans Gex interacting... 28 4.3
L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting... 28 4.3
L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting... 28 4.3
Z83122-10|CAB05601.1| 896|Caenorhabditis elegans Hypothetical p... 27 5.7
Z83122-9|CAB05598.1| 906|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z66498-4|CAA91292.1| 142|Caenorhabditis elegans Hypothetical pr... 27 5.7
U00052-3|AAK21426.1| 308|Caenorhabditis elegans Hypothetical pr... 27 5.7
AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical ... 27 5.7
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 27 5.7
Z81068-6|CAB02986.1| 725|Caenorhabditis elegans Hypothetical pr... 27 7.6
U41510-8|AAK39385.1| 493|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z48009-12|CAA88089.1| 1137|Caenorhabditis elegans Hypothetical p... 27 10.0
Z48007-3|CAA88054.1| 1137|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z48007-2|CAA88053.2| 1118|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z22178-4|CAA80156.1| 359|Caenorhabditis elegans Hypothetical pr... 27 10.0
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 27 10.0
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical... 27 10.0
>AL132902-10|CAB82002.1| 286|Caenorhabditis elegans Hypothetical
protein Y71A12B.11 protein.
Length = 286
Score = 39.9 bits (89), Expect = 0.001
Identities = 26/88 (29%), Positives = 43/88 (48%)
Frame = +1
Query: 1 AEDXMDIDETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLDSMIKEPESEEAEG 180
+ED ++ET + A+N+ S + EE+ +D D+ DS E EEAEG
Sbjct: 186 SEDEEYVEETCTDALNQLEPESDAADESVEEEEEEDEDSDDSDDSDDS-----EEEEAEG 240
Query: 181 LGDAEESPDQSISSAILPTDSGVGELKE 264
++P + +S+ TD +GEL +
Sbjct: 241 --STAQAPAEKANSSTTTTDQNIGELSD 266
>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 20
protein.
Length = 1254
Score = 36.3 bits (80), Expect = 0.012
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Frame = +1
Query: 22 DETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLDSMIKEPESEEAEGLGDAEES 201
D ASG NEE D + + EE D S K+ E E E L EE
Sbjct: 123 DTVASGKTNEEDRKSIDTSVDLIQEREEQEDTGDNQISQQSSSKDHECPEREDLSIHEEP 182
Query: 202 PDQSISSAILP-TDSGV 249
+ + +LP T SG+
Sbjct: 183 TNSPTNDGVLPSTSSGI 199
>U28993-8|AAK31496.1| 632|Caenorhabditis elegans C.elegans homeobox
protein 38,isoform a protein.
Length = 632
Score = 31.9 bits (69), Expect = 0.27
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 106 NSPQNDQDNQLDSMI-KEPESEEAEGLGDAEESPDQSISSAILPTDSGVGELKEHQAFK 279
N ++ D +LD + E EE +GD EE ++ + ILPT V EL+E K
Sbjct: 558 NGDSHEDDEELDELNDSELAYEEDVEIGDEEEEDEEQANGDILPTPK-VEELEEKTVIK 615
>U28993-7|AAL27244.1| 641|Caenorhabditis elegans C.elegans homeobox
protein 38,isoform b protein.
Length = 641
Score = 31.9 bits (69), Expect = 0.27
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 106 NSPQNDQDNQLDSMI-KEPESEEAEGLGDAEESPDQSISSAILPTDSGVGELKEHQAFK 279
N ++ D +LD + E EE +GD EE ++ + ILPT V EL+E K
Sbjct: 567 NGDSHEDDEELDELNDSELAYEEDVEIGDEEEEDEEQANGDILPTPK-VEELEEKTVIK 624
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 31.1 bits (67), Expect = 0.46
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Frame = +1
Query: 1 AEDXMDIDETASGAMNEESAYIGDNCLSTPADTEE--NSPQNDQDNQLDSMIKEPESEEA 174
AED DID+ G N+ G++ D E+ + + + QLD + + E +E
Sbjct: 3674 AEDLQDIDKNEKGDQND-----GEDESDEEPDVEDQMGDVEEEDEKQLDPKMWDEEEKEE 3728
Query: 175 EGLGDAEESPDQSISSAILPTDSGVGELKEHQAFK 279
+ D +++ DQ +A TD V + + QA K
Sbjct: 3729 Q---DQQKNMDQEQEAAEDQTDEMVAKEDDAQAPK 3760
>Z68748-12|CAN86588.1| 792|Caenorhabditis elegans Hypothetical
protein F13H10.4c protein.
Length = 792
Score = 30.7 bits (66), Expect = 0.61
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 85 TPADTEENSPQNDQDNQLDSMIKEPESEEAEGLGD-AEESPDQSISSAILP 234
T AD + + ++ N DS++K+ SEEA+G D + S D ++S P
Sbjct: 567 TDADYQRTAKAMEELNNFDSLVKDHWSEEAQGFFDYGKHSFDVALSPVPTP 617
>Z68748-10|CAL36500.1| 789|Caenorhabditis elegans Hypothetical
protein F13H10.4b protein.
Length = 789
Score = 30.7 bits (66), Expect = 0.61
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 85 TPADTEENSPQNDQDNQLDSMIKEPESEEAEGLGD-AEESPDQSISSAILP 234
T AD + + ++ N DS++K+ SEEA+G D + S D ++S P
Sbjct: 564 TDADYQRTAKAMEELNNFDSLVKDHWSEEAQGFFDYGKHSFDVALSPVPTP 614
>Z68748-9|CAL36499.1| 796|Caenorhabditis elegans Hypothetical
protein F13H10.4a protein.
Length = 796
Score = 30.7 bits (66), Expect = 0.61
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 85 TPADTEENSPQNDQDNQLDSMIKEPESEEAEGLGD-AEESPDQSISSAILP 234
T AD + + ++ N DS++K+ SEEA+G D + S D ++S P
Sbjct: 571 TDADYQRTAKAMEELNNFDSLVKDHWSEEAQGFFDYGKHSFDVALSPVPTP 621
>Z49911-7|CAA90129.1| 861|Caenorhabditis elegans Hypothetical
protein M28.9 protein.
Length = 861
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 79 LSTPADTEENSPQNDQDNQLDSMIKEPESEEAEGLGDAEESPDQSI 216
LST ADT S + D N++ +IK ++ G G +S +SI
Sbjct: 297 LSTAADTVMGSSELDSVNKMVDVIKAEIKSQSRGAGSVIDSAQKSI 342
>AC090999-25|AAK26157.2| 921|Caenorhabditis elegans Hypothetical
protein Y82E9BR.18 protein.
Length = 921
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/74 (21%), Positives = 33/74 (44%)
Frame = +1
Query: 4 EDXMDIDETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLDSMIKEPESEEAEGL 183
E + ++++ + +EE ++ A EN +ND+ ++ I P EEAE +
Sbjct: 630 ERHVALEKSKAEEKSEEDGEKMEDSPKKTAKIPENPAENDEFPDIEVKIARPSGEEAEEM 689
Query: 184 GDAEESPDQSISSA 225
E P + ++
Sbjct: 690 TLIEVGPKNPVKNS 703
>AC024807-1|AAF59529.5| 704|Caenorhabditis elegans Hypothetical
protein Y53G8AL.1 protein.
Length = 704
Score = 28.3 bits (60), Expect = 3.3
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +1
Query: 25 ETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLD--SMIKEPESEEAEGLGDAEE 198
E+ + A N+E+ I S+P T E+ P D D S I+ S+ +E L ++ +
Sbjct: 563 ESENPAENDENPEISKIMTSSPPGTPESEPIADDSESEDEKSTIRYIPSKNSESLQNSMD 622
Query: 199 SPD 207
S D
Sbjct: 623 SSD 625
>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
isoform a protein.
Length = 1702
Score = 27.9 bits (59), Expect = 4.3
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 25 ETASGAMNEESAYIGDNCLSTPADTEENSPQ-NDQDNQLDSMIKEPESEEAEGLGDAEES 201
++ S A++E + I D + PAD E+ + Q D ++Q +S ++PE + + E+S
Sbjct: 1129 QSRSVALHERAQMIVDFAKTQPADQEDQTVQLQDHEHQYNSQ-QQPEYQHQPLVQMQEQS 1187
Query: 202 PDQ 210
+Q
Sbjct: 1188 NEQ 1190
>L15188-6|AAA27950.2| 1132|Caenorhabditis elegans Gex interacting
protein protein8, isoform a protein.
Length = 1132
Score = 27.9 bits (59), Expect = 4.3
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Frame = +1
Query: 16 DIDETAS-GAMNEESAYIGDNCLSTPADTEENSPQ-NDQD-NQLDSMIKEPESEEAEGLG 186
D DE AS G+ ++S D +PAD E +SP+ DQD +Q ++ + EE E +
Sbjct: 578 DNDEDASRGSRGKDSKAPSDRD-GSPADMEGDSPEGQDQDADQDQDQDQDVDEEEEEVIV 636
Query: 187 DAEESPDQSISS 222
+SP +++ S
Sbjct: 637 RDIDSPVKTLLS 648
>L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting
protein protein8, isoform b protein.
Length = 1780
Score = 27.9 bits (59), Expect = 4.3
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Frame = +1
Query: 16 DIDETAS-GAMNEESAYIGDNCLSTPADTEENSPQ-NDQD-NQLDSMIKEPESEEAEGLG 186
D DE AS G+ ++S D +PAD E +SP+ DQD +Q ++ + EE E +
Sbjct: 578 DNDEDASRGSRGKDSKAPSDRD-GSPADMEGDSPEGQDQDADQDQDQDQDVDEEEEEVIV 636
Query: 187 DAEESPDQSISS 222
+SP +++ S
Sbjct: 637 RDIDSPVKTLLS 648
>L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting
protein protein8, isoform c protein.
Length = 1697
Score = 27.9 bits (59), Expect = 4.3
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Frame = +1
Query: 16 DIDETAS-GAMNEESAYIGDNCLSTPADTEENSPQ-NDQD-NQLDSMIKEPESEEAEGLG 186
D DE AS G+ ++S D +PAD E +SP+ DQD +Q ++ + EE E +
Sbjct: 578 DNDEDASRGSRGKDSKAPSDRD-GSPADMEGDSPEGQDQDADQDQDQDQDVDEEEEEVIV 636
Query: 187 DAEESPDQSISS 222
+SP +++ S
Sbjct: 637 RDIDSPVKTLLS 648
>Z83122-10|CAB05601.1| 896|Caenorhabditis elegans Hypothetical
protein R11A5.1b protein.
Length = 896
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 94 DTEENSPQNDQD-NQLDSMIKEPESEEAEGLGDAEESPDQS 213
D EE+ + ++D ++ D +E ESEE E + EES ++S
Sbjct: 582 DEEEDEDEEEEDEDEEDEEEEENESEEEEEDDEDEESEEES 622
>Z83122-9|CAB05598.1| 906|Caenorhabditis elegans Hypothetical
protein R11A5.1a protein.
Length = 906
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 94 DTEENSPQNDQD-NQLDSMIKEPESEEAEGLGDAEESPDQS 213
D EE+ + ++D ++ D +E ESEE E + EES ++S
Sbjct: 592 DEEEDEDEEEEDEDEEDEEEEENESEEEEEDDEDEESEEES 632
>Z66498-4|CAA91292.1| 142|Caenorhabditis elegans Hypothetical
protein M195.4 protein.
Length = 142
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 94 DTEENSPQNDQDNQLDSMIKEPESEEAEGLGDAEESPDQS 213
D ++ P+N++ D K P + AEG G AE+ D+S
Sbjct: 28 DVKKEEPKNEEKKPGDEN-KNPAAVGAEGAGAAEKPQDKS 66
>U00052-3|AAK21426.1| 308|Caenorhabditis elegans Hypothetical
protein K02F3.4 protein.
Length = 308
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +1
Query: 7 DXMDIDETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLDSMIKE 156
D +D+D S + AYI D+ +++P++ SP + +D +
Sbjct: 160 DFLDLDSLMSCDITSLDAYIHDDSIASPSNASHISPPASDIDPVDEFFPQ 209
>AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical
protein C35E7.5a protein.
Length = 1262
Score = 27.5 bits (58), Expect = 5.7
Identities = 22/73 (30%), Positives = 35/73 (47%)
Frame = +1
Query: 22 DETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLDSMIKEPESEEAEGLGDAEES 201
D+T S E + I DNC T + DN LD + +E +S E +AE+
Sbjct: 1095 DDTQSTTTALEPSDIEDNCDVESTTTAVEPLDFEDDNSLD-ITQESDSLELMEHVEAEDD 1153
Query: 202 PDQSISSAILPTD 240
+S ++A+ P+D
Sbjct: 1154 -TKSTTTALEPSD 1165
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 82 STPADTEENSPQNDQDNQLDSMIKEPESE 168
STP++ + PQ+D D SM + ESE
Sbjct: 169 STPSEHYDGHPQDDDDESCSSMSEFDESE 197
>Z81068-6|CAB02986.1| 725|Caenorhabditis elegans Hypothetical
protein F25H5.5 protein.
Length = 725
Score = 27.1 bits (57), Expect = 7.6
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Frame = +1
Query: 22 DETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLDSMI------KEPESEEAEGL 183
D SG + E+S I + C + TE+ ++ +L ++ + E+EEAE
Sbjct: 353 DVFGSGTL-EDSETIKEICEKSGEFTEKIETVLEEKTELKRVVLSDGEDSDEEAEEAEEE 411
Query: 184 GDAEESPDQ 210
GD EE P++
Sbjct: 412 GDDEEEPEE 420
>U41510-8|AAK39385.1| 493|Caenorhabditis elegans Hypothetical
protein ZC449.5 protein.
Length = 493
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/58 (24%), Positives = 25/58 (43%)
Frame = +1
Query: 82 STPADTEENSPQNDQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGE 255
STP E ++ + D K+ + ++ + D+EE D S + +DS E
Sbjct: 284 STPTSEESTEQSTEKPKKEDKKDKKDKKDKKQKKEDSEEDDDDKKSKSSSSSDSKTDE 341
>Z48009-12|CAA88089.1| 1137|Caenorhabditis elegans Hypothetical
protein AH6.1 protein.
Length = 1137
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 368 LCGTTNVVDIITAGNPSFSYIFIHC 294
LC ++ DI++ GN S Y F+ C
Sbjct: 638 LCSRGSLQDILSRGNFSMDYFFMFC 662
>Z48007-3|CAA88054.1| 1137|Caenorhabditis elegans Hypothetical
protein AH6.1 protein.
Length = 1137
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 368 LCGTTNVVDIITAGNPSFSYIFIHC 294
LC ++ DI++ GN S Y F+ C
Sbjct: 638 LCSRGSLQDILSRGNFSMDYFFMFC 662
>Z48007-2|CAA88053.2| 1118|Caenorhabditis elegans Hypothetical
protein R134.2 protein.
Length = 1118
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 368 LCGTTNVVDIITAGNPSFSYIFIHC 294
LC ++ DI++ GN S Y F+ C
Sbjct: 639 LCSRGSLQDILSRGNFSMDYFFMFC 663
>Z22178-4|CAA80156.1| 359|Caenorhabditis elegans Hypothetical
protein F54C8.4 protein.
Length = 359
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 73 NCLSTPADTEENSPQNDQDNQLDSMIKEPESEEAEGLGDAEES 201
N +TP + E +PQ +++ + D E E+E G G + S
Sbjct: 277 NGANTPPEPSEGTPQEEEEFEEDFEEIEEETETEPGKGQSVSS 319
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 139 DSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGELKE 264
+ ++K+P+S + E GD P++ + LP DS E+ E
Sbjct: 109 EKILKKPKSRKKENGGDGPAPPNKILFCTNLP-DSATAEMLE 149
>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
protein Y75B8A.13 protein.
Length = 1420
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 88 PADTEENSPQNDQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAI-LPTDS 243
P +E+ QND LD +E + E + D + D+S A+ LP D+
Sbjct: 374 PGSRDES--QNDVTASLDGSTEEASQDHTEFVADTPGAGDESTDDALNLPMDT 424
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 1 AEDXMD-IDETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLDSMIKEPESEEAE 177
+ED D +D +G +++ + ++ S+ +D + S N ++ ++ + E E
Sbjct: 598 SEDKDDSMDSAEAGERSDDPQDLRES--SSSSDESDESEGNSSPSEAPGSPRQQDPEPME 655
Query: 178 GLGDAEESP 204
G+A E+P
Sbjct: 656 AFGEASEAP 664
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,404,768
Number of Sequences: 27780
Number of extensions: 134874
Number of successful extensions: 650
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -