Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0253.Seq
(499 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 23 1.8
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.1
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.1
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.1
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.1
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.1
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.1
AB183889-1|BAD86829.1| 316|Apis mellifera Mos protein. 21 5.4
>AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A
isoform protein.
Length = 567
Score = 23.0 bits (47), Expect = 1.8
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +3
Query: 288 SSTMDEDIAEGGVAXSDDVNDISSAAQEILSTGXSSSXAEPGS 416
S+TM+ GG+ I A E LST SS P S
Sbjct: 281 STTMNGSPGSGGIRSDQMGVKIEPAEAESLSTSGSSGILTPVS 323
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.1
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +3
Query: 297 MDEDIAEGGVAXSDDVNDISSAAQEILSTGXSSSXAEPGSDISSSGQXE 443
+D+DI A + I SA +STG ++ + + + SG E
Sbjct: 348 IDDDIRHKNSAANPPSGYIRSAFGTPISTGRPATVEDTSASLPLSGMQE 396
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.1
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +3
Query: 297 MDEDIAEGGVAXSDDVNDISSAAQEILSTGXSSSXAEPGSDISSSGQXE 443
+D+DI A + I SA +STG ++ + + + SG E
Sbjct: 348 IDDDIRHKNSAANPPSGYIRSAFGTPISTGRPATVEDTSASLPLSGMQE 396
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.1
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +3
Query: 297 MDEDIAEGGVAXSDDVNDISSAAQEILSTGXSSSXAEPGSDISSSGQXE 443
+D+DI A + I SA +STG ++ + + + SG E
Sbjct: 348 IDDDIRHKNSAANPPSGYIRSAFGTPISTGRPATVEDTSASLPLSGMQE 396
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.1
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +3
Query: 297 MDEDIAEGGVAXSDDVNDISSAAQEILSTGXSSSXAEPGSDISSSGQXE 443
+D+DI A + I SA +STG ++ + + + SG E
Sbjct: 348 IDDDIRHKNSAANPPSGYIRSAFGTPISTGRPATVEDTSASLPLSGMQE 396
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.1
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +3
Query: 297 MDEDIAEGGVAXSDDVNDISSAAQEILSTGXSSSXAEPGSDISSSGQXE 443
+D+DI A + I SA +STG ++ + + + SG E
Sbjct: 348 IDDDIRHKNSAANPPSGYIRSAFGTPISTGRPATVEDTSASLPLSGMQE 396
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.1
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +3
Query: 297 MDEDIAEGGVAXSDDVNDISSAAQEILSTGXSSSXAEPGSDISSSGQXE 443
+D+DI A + I SA +STG ++ + + + SG E
Sbjct: 348 IDDDIRHKNSAANPPSGYIRSAFGTPISTGRPATVEDTSASLPLSGMQE 396
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 4.1
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +3
Query: 297 MDEDIAEGGVAXSDDVNDISSAAQEILSTGXSSSXAEPGSDISSSGQXE 443
+D+DI A + I SA +STG ++ + + + SG E
Sbjct: 416 IDDDIRHKNSAANPPSGYIRSAFGTPISTGRPATVEDTSASLPLSGMQE 464
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 4.1
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +3
Query: 297 MDEDIAEGGVAXSDDVNDISSAAQEILSTGXSSSXAEPGSDISSSGQXE 443
+D+DI A + I SA +STG ++ + + + SG E
Sbjct: 416 IDDDIRHKNSAANPPSGYIRSAFGTPISTGRPATVEDTSASLPLSGMQE 464
>AB183889-1|BAD86829.1| 316|Apis mellifera Mos protein.
Length = 316
Score = 21.4 bits (43), Expect = 5.4
Identities = 8/26 (30%), Positives = 12/26 (46%)
Frame = -3
Query: 104 SSVSAGVERQLSPIYADSSFIAPEAV 27
SSV G ++ Y + APE +
Sbjct: 201 SSVLIGAPNEIDKFYGTPGYTAPEVI 226
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,542
Number of Sequences: 438
Number of extensions: 1382
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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