Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0253.Seq
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g39440.1 68415.m04841 expressed protein 32 0.25
At3g04820.1 68416.m00522 expressed protein contains PFam profile... 31 0.43
At5g22090.1 68418.m02572 expressed protein 31 0.57
At5g45200.1 68418.m05548 disease resistance protein (TIR-NBS-LRR... 29 1.3
At1g06190.1 68414.m00651 expressed protein 29 1.3
At5g61330.1 68418.m07696 rRNA processing protein-related contain... 29 1.7
At4g18600.1 68417.m02755 expressed protein 29 1.7
At4g08310.1 68417.m01372 expressed protein glutamic acid-rich pr... 29 2.3
At2g27470.1 68415.m03320 CCAAT-box binding transcription factor ... 29 2.3
At5g56360.1 68418.m07034 calmodulin-binding protein similar to a... 28 3.0
At5g17160.1 68418.m02010 expressed protein 28 3.0
At2g29620.1 68415.m03598 expressed protein 28 3.0
At5g49220.1 68418.m06093 expressed protein 28 4.0
At5g05700.1 68418.m00627 arginine-tRNA-protein transferase 1 / a... 28 4.0
At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive eff... 28 4.0
At1g05490.1 68414.m00559 C protein immunoglobulin-A-binding beta... 28 4.0
At5g54300.1 68418.m06763 expressed protein contains similarity t... 27 5.3
At5g40450.1 68418.m04905 expressed protein 27 5.3
At5g65630.1 68418.m08256 DNA-binding bromodomain-containing prot... 27 7.0
At5g55820.1 68418.m06956 expressed protein 27 7.0
At5g35220.1 68418.m04176 peptidase M50 family protein / sterol-r... 27 7.0
At5g23950.1 68418.m02812 C2 domain-containing protein similar to... 27 7.0
At5g17910.1 68418.m02100 expressed protein 27 7.0
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso... 27 7.0
At3g58110.1 68416.m06480 expressed protein 27 7.0
At3g07050.1 68416.m00837 GTP-binding family protein contains Pfa... 27 7.0
At2g34170.1 68415.m04182 expressed protein contains Pfam profile... 27 7.0
At2g22795.1 68415.m02704 expressed protein 27 7.0
At5g55920.1 68418.m06975 nucleolar protein, putative similar to ... 27 9.3
At3g45830.1 68416.m04960 expressed protein 27 9.3
At3g28770.1 68416.m03591 expressed protein 27 9.3
At3g15150.1 68416.m01916 expressed protein 27 9.3
At2g29820.1 68415.m03622 kelch repeat-containing F-box family pr... 27 9.3
At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family pro... 27 9.3
At1g56340.1 68414.m06476 calreticulin 1 (CRT1) identical to calr... 27 9.3
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 27 9.3
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 27 9.3
>At2g39440.1 68415.m04841 expressed protein
Length = 773
Score = 31.9 bits (69), Expect = 0.25
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 118 NDQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAIL 231
+D+++ LDS IKE + E G D +ES D S IL
Sbjct: 592 SDEESALDSAIKESKESEPIGFLDTQESRDSSYIDDIL 629
>At3g04820.1 68416.m00522 expressed protein contains PFam profile
PF01142: Uncharacterized protein family UPF0024;
expression supported by MPSS
Length = 747
Score = 31.1 bits (67), Expect = 0.43
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +1
Query: 97 TEENSPQNDQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGELKE 264
T+ N P + D LD + P ++ E +G EE D+S+ S P DSG LK+
Sbjct: 625 TDSNKPLAETD--LDRI---PMNKPVEKVGSTEEIEDESMKSDTNPHDSGETNLKD 675
>At5g22090.1 68418.m02572 expressed protein
Length = 463
Score = 30.7 bits (66), Expect = 0.57
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +1
Query: 106 NSPQNDQDNQLDSMIK---EPESEEAEGLGDAEESPDQ 210
N P D+++++DS ++ E E EE E + EE+PD+
Sbjct: 282 NEPNYDKEDEIDSEVQWFDEEEEEEEEEEDEEEEAPDE 319
>At5g45200.1 68418.m05548 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1261
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +1
Query: 151 KEPESEEAEGLGDAEESPDQSISSAILPTDSGVGELKEHQAFKMMNQVQWMKI*LKEGLP 330
+E ES EG G+AE S S + ++ V +LKE K N +++ + G+P
Sbjct: 190 RESESPRGEGEGEAEPKTTPSDDSLLHGIETRVEQLKEKLELKSENVTRFIGV---VGMP 246
Query: 331 AVMMST 348
+ +T
Sbjct: 247 GIGKTT 252
>At1g06190.1 68414.m00651 expressed protein
Length = 401
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 88 PADTEENSPQNDQDNQLDSMIKEPESE-EAEGLGDAEESPDQSISSAILPTDSGV 249
PA E+ P+N+ + + + EP+SE + E +E D ++ +L D G+
Sbjct: 281 PAYEHEHEPENESEPGPVTTMLEPDSELKPESSSFYQEEEDDDVTFDVLSQDDGI 335
>At5g61330.1 68418.m07696 rRNA processing protein-related contains
weak similarity to rRNA processing protein EBP2
(EBNA1-binding protein homolog) (Swiss-Prot:P36049)
[Saccharomyces cerevisiae]
Length = 436
Score = 29.1 bits (62), Expect = 1.7
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +1
Query: 43 MNEESAYIGDN-CLSTPADTEENS-PQNDQDNQLDSMIKEPESEEAEGLGDAEESPD 207
++ ES I D L +D E++ P +D+++DSM + E + GD EE +
Sbjct: 13 LDSESEDISDQENLKAESDNEDDQLPDGIEDDEVDSMEDDEGESEEDDEGDTEEDDE 69
>At4g18600.1 68417.m02755 expressed protein
Length = 1907
Score = 29.1 bits (62), Expect = 1.7
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Frame = +1
Query: 1 AEDXMDIDETASGAMNEESAYIGDNCLSTPADTEENSPQND--QDNQLDSMIKEPESEEA 174
+E DID + Y GD +ST + NS ND +D + M +P E +
Sbjct: 372 SESESDIDGVPKPKLEH---YFGD--ISTYCSEDANSDNNDGSEDITYEEMAHDPRHENS 426
Query: 175 EGLGDAEESPDQSISSAILPTDSGV 249
E D+S S + LP DS V
Sbjct: 427 E---------DESCSGSYLPEDSNV 442
>At4g08310.1 68417.m01372 expressed protein glutamic acid-rich
protein precursor - Plasmodium falciparum, PIR2:A54514
Length = 504
Score = 28.7 bits (61), Expect = 2.3
Identities = 17/57 (29%), Positives = 32/57 (56%)
Frame = +1
Query: 94 DTEENSPQNDQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGELKE 264
D+E++ + D+D ++ +++E E EE E G +E+ + S + L T+ G E E
Sbjct: 452 DSEDSENEEDEDEEV--VVEEEEEEEDE--GGSEDGGEGSQNEGELKTEDGGEEESE 504
>At2g27470.1 68415.m03320 CCAAT-box binding transcription factor
subunit HAP3-related contains Pfam PF00808 :
Histone-like transcription factor (CBF/NF-Y) and
archaeal histone; similar to polymerase epsilon p17
subunit (DNA polymerase epsilon subunit 3) (YB-like
protein 1) (YBL1) (NF-YB-like protein) (SP:Q9JKP7) [Mus
musculus];
Length = 275
Score = 28.7 bits (61), Expect = 2.3
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +1
Query: 22 DETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLDSMIKEPESEEA--EGLGDAE 195
DE +EE +N D EEN +N ++N D ++ + E + E ++E
Sbjct: 176 DEEDENGNDEEDENDDENTEENGND-EENDDENTEENGNDEENEKEDEENSMEENGNESE 234
Query: 196 ESPDQSISSAILPTDSGVGELKEHQ 270
ES ++ S + SGVGE E++
Sbjct: 235 ESGNEDHS--MEENGSGVGEDNENE 257
>At5g56360.1 68418.m07034 calmodulin-binding protein similar to
alpha glucosidase II beta subunit from GI:2104691 [Mus
musculus]
Length = 647
Score = 28.3 bits (60), Expect = 3.0
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Frame = +1
Query: 94 DTEENSPQNDQDNQLDSMIKEPESEEAE-----GLGDAEESPDQSISSAILPTDSGVGEL 258
D +E + ++ +L +E E +EAE G GDAEE D S D G +
Sbjct: 195 DRKEQIEKVEEKERLQKEKEEKEKKEAELAAQQGKGDAEEKTDDSEKVEESSHDEGTPAV 254
Query: 259 KEH 267
+H
Sbjct: 255 SQH 257
>At5g17160.1 68418.m02010 expressed protein
Length = 569
Score = 28.3 bits (60), Expect = 3.0
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +1
Query: 64 IGDNCLSTPADTEENSPQNDQDNQL--DSMIKEPESEEAEGLGDAEESPDQSISSAILPT 237
+ D L A TE ++ N+ N L D + + E+E A DAE P+ ++ T
Sbjct: 304 VSDIPLLESAITETHNDDNESKNVLAIDRSVDQQETEHAIQENDAE--PETKVNQ----T 357
Query: 238 DSGVGELKEHQAFK 279
DS G+ K QA +
Sbjct: 358 DSDAGDSKTKQAIQ 371
>At2g29620.1 68415.m03598 expressed protein
Length = 747
Score = 28.3 bits (60), Expect = 3.0
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +1
Query: 115 QNDQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGELKEHQA 273
++DQD + + PE+EEA L E + QS SA D + EL E+ A
Sbjct: 549 KDDQDQNETTSLASPENEEARNL---EPTVPQS-DSAFFKRDEELKELSENSA 597
>At5g49220.1 68418.m06093 expressed protein
Length = 409
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 154 EPESEEAEGLGDAEESPDQSISSAILPTDSGVGEL 258
+P + +GD E S + S +S LP D VGEL
Sbjct: 194 DPLKKPRNPVGDNEGSSEGSSNSRTLPVDLSVGEL 228
>At5g05700.1 68418.m00627 arginine-tRNA-protein transferase 1 /
arginyltransferase 1 / arginyl-tRNA-protein transferase
1 (ATE1) identical to SP|Q9ZT48 Arginine-tRNA-protein
transferase 1 (EC 2.3.2.8) (R-transferase 1)
(Arginyltransferase 1) (Arginyl-tRNA--protein
transferase 1) {Arabidopsis thaliana}
Length = 632
Score = 27.9 bits (59), Expect = 4.0
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = +1
Query: 19 IDETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLDSMIKEPESEEAEGLGDAEE 198
++ AS + E DN + + E+ +D D+ D + E ESE++ D
Sbjct: 515 VEPAASEHEDMEQGETNDNFMGCSDEDEDEDEDDDDDDDDDEEMYETESEDSHIESD-PG 573
Query: 199 SPDQSISSAIL 231
S D I++ ++
Sbjct: 574 SKDNDINNILI 584
>At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1939
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 124 QDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILP 234
QDN +D + E E E + L +S I+ +LP
Sbjct: 656 QDNMMDLTVDETEKESLKNLPSLHKSHQPDINKTLLP 692
>At1g05490.1 68414.m00559 C protein immunoglobulin-A-binding beta
antigen-related contains weak similarity to C protein
immunoglobulin-A-binding beta antigen [Streptococcus
agalactiae] gi|18028989|gb|AAL56250
Length = 731
Score = 27.9 bits (59), Expect = 4.0
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +3
Query: 270 SVQDDESSTMDEDIAEGGVAXSDDVNDISSAAQEILSTGXSSSXAEPGSDISSS 431
S+ D E S+ + D E S+D N + E LS+ SS + S SSS
Sbjct: 243 SISDGEDSSSETDEEEEENQDSEDNNTKDNVTVESLSSEDPSSSSSSSSSSSSS 296
>At5g54300.1 68418.m06763 expressed protein contains similarity to
cotton fiber expressed protein 1 [Gossypium hirsutum]
gi|3264828|gb|AAC33276
Length = 326
Score = 27.5 bits (58), Expect = 5.3
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +1
Query: 136 LDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGELKEHQAFK--MMNQVQWMKI 309
++++ K PE +EAE ++ +SP+ L DS + +H K NQ + +K
Sbjct: 137 VEAIRKFPEVQEAEKSKESSDSPEPETEKPKLKNDSPEISILKHSTRKPPRFNQQKSLKS 196
Query: 310 *LKEGLPAVMMSTTLVVPHRRYSALE 387
+ G + T P RR LE
Sbjct: 197 NSEGGNKKTALGVT--KPPRRQDTLE 220
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 27.5 bits (58), Expect = 5.3
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +1
Query: 79 LSTPADTEENSPQNDQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAIL 231
L T +TE ND + SMIKEP +E + D ES ++ S IL
Sbjct: 2220 LQTTLETERAI--NDSASSEVSMIKEPADQEEKKGDDVVESNEKDFVSDIL 2268
>At5g65630.1 68418.m08256 DNA-binding bromodomain-containing protein
similar to 5.9 kb fsh membrane protein [Drosophila
melanogaster] GI:157455; contains Pfam profile PF00439:
Bromodomain
Length = 590
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 306 DIAEGGVAXSDDVNDISSAAQEILSTGXSSSXAEPGSDISSSG 434
+I G A + + SS++ S+G SSS ++ GS SSSG
Sbjct: 528 EIERDGTAVAAAASSGSSSSGSSSSSGGSSSSSDSGSGGSSSG 570
>At5g55820.1 68418.m06956 expressed protein
Length = 1826
Score = 27.1 bits (57), Expect = 7.0
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +1
Query: 91 ADTEENSPQ-NDQDNQLDSMIKEPESEEAEGLGDAEESPDQ---SISSAILPTD 240
A+ EN + +D N+ +E S E + LGD E P + S+S A +P D
Sbjct: 1353 AEENENIDEISDAVNEASGSERENVSAERKPLGDVNEDPMKLLPSVSEAKIPAD 1406
>At5g35220.1 68418.m04176 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains PFam PF02163:
sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 548
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +3
Query: 264 APSVQDDESSTMDEDIAEGGVAXSDDVNDISSAAQEILSTGXSSSXAEPGSDISS 428
A + +DE+S D+ I E G V ++ +E T SSS ++ S
Sbjct: 53 AKCLGNDENSNRDDSIGENGETHKSSVVKTATFEEEDEETSKSSSTTSSSNEFGS 107
>At5g23950.1 68418.m02812 C2 domain-containing protein similar to
cold-regulated gene SRC2 [Glycine max] GI:2055230;
contains Pfam profile PF00168: C2 domain
Length = 219
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 258 EGAPSVQDDESSTMDEDIAEGGVAXSDDVND 350
EG +V+ DE D+D A A DD +D
Sbjct: 181 EGLEAVEGDEDDDDDDDAAAAAAADDDDDDD 211
>At5g17910.1 68418.m02100 expressed protein
Length = 1342
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +1
Query: 70 DNCLSTPADTEENSPQNDQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDS 243
D + + D+E + + D +N+ + +E E EE + + +E D SAI T++
Sbjct: 305 DEGMESDGDSESHGEEGDNENEDEEEDEEEEDEEEKQ--EKKEDKDDESKSAIKWTEA 360
>At4g37820.1 68417.m05351 expressed protein Kaposi's
sarcoma-associated herpes-like virus ORF73gene, Kaposi's
sarcoma-associated herpesvirus, U52064
Length = 532
Score = 27.1 bits (57), Expect = 7.0
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Frame = +1
Query: 4 EDXMDIDETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLDSMIKEPESEEAEGL 183
+D D E G+ NE G +ST +EN + + + + ++E +EAEG
Sbjct: 77 KDVKDEVEDEEGSKNE-----GGGDVSTD---KENGDEIVEREEEEKAVEENNEKEAEGT 128
Query: 184 GDAE--ESPDQSISSAILPTDSGVGELKEHQA 273
G+ E E + S ++ G E+ +A
Sbjct: 129 GNEEGNEDSNNGESEKVVDESEGGNEISNEEA 160
>At3g58110.1 68416.m06480 expressed protein
Length = 784
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 91 ADTEENSPQNDQD-NQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGELKE 264
AD EE+ +D D ++D ++K P+ D E ++ + +A D G +LKE
Sbjct: 314 ADDEEDDDDDDDDVKEVDFLVKSPKE-------DCLEVKEEDVGAADSRKDDGAVDLKE 365
>At3g07050.1 68416.m00837 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 582
Score = 27.1 bits (57), Expect = 7.0
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Frame = +1
Query: 16 DIDETASGAMNEESAYIGDNCLST-----PADTEENSPQNDQDNQLDSMIKEPESEEAEG 180
+IDE SG ES++IG L T P N P N + ++ K EEAE
Sbjct: 428 NIDEVYSG----ESSFIGS--LKTVNEFNPVIIPSNGPLNFDETMIEDESKTQTEEEAEH 481
Query: 181 LGDAEES----PDQSISSAILPTDSGVGELKEHQAFKMMN 288
D +ES ++ +++G +K + A M+N
Sbjct: 482 ESDDDESMGGEEEEEAGKTKEKSETGRQNVKLYAAESMLN 521
>At2g34170.1 68415.m04182 expressed protein contains Pfam profile:
PF05097 protein of unknown function (DUF688)
Length = 523
Score = 27.1 bits (57), Expect = 7.0
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 103 ENSPQNDQDNQLDSMIKEPE--SEEAEGLGDAEESPDQSISSAILPTDSGVGELKEHQAF 276
ENSP+ +N+ ++ K PE SEE E G ++ + + L SGV +K +
Sbjct: 375 ENSPRTSNENRSSNVKKLPETISEEPEMEGKKPKAVRELKAVETLSISSGVKMMKADELG 434
Query: 277 K 279
K
Sbjct: 435 K 435
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 97 TEENSPQNDQDNQLDSMIKEPESEEAEGLGDAEESPDQSI 216
TEE+ + +DN + E +E G+ ++EES ++ I
Sbjct: 249 TEESEVEEKKDNGSSEESEVEEKKENRGIDESEESKEKDI 288
>At5g55920.1 68418.m06975 nucleolar protein, putative similar to
SP|P46087 Proliferating-cell nucleolar antigen p120
(Proliferation-associated nucleolar protein p120) {Homo
sapiens}, SP|P40991 Nucleolar protein NOP2
{Saccharomyces cerevisiae}; contains Pfam profile
PF01189: NOL1/NOP2/sun family
Length = 682
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/79 (20%), Positives = 32/79 (40%)
Frame = +1
Query: 7 DXMDIDETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLDSMIKEPESEEAEGLG 186
D D D+ + +EE D + ++ +ND++ D ++ E+ EG
Sbjct: 80 DGSDEDDISPAVESEEIDESDDGENGSNQLFSDDEEENDEETLGDDFLEGSGDEDEEGSL 139
Query: 187 DAEESPDQSISSAILPTDS 243
DA+ D + +D+
Sbjct: 140 DADSDADSDDDDIVAKSDA 158
>At3g45830.1 68416.m04960 expressed protein
Length = 1298
Score = 26.6 bits (56), Expect = 9.3
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +1
Query: 4 EDXMDIDETASGAMNEESAYIGDNCLSTPADTEEN-SPQNDQDNQLDSMIKEPESEEAEG 180
ED +D+ ++ A+ G+N S P + E+N SPQ N I+E S
Sbjct: 838 EDSLDVSKSV--AVENAEHETGENGASVPEEAEDNKSPQQGNGNLPSLTIQEIVSCVKSN 895
Query: 181 LGD 189
GD
Sbjct: 896 PGD 898
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 40 AMNEESAYIGDNCLSTPADTEENS 111
+MN ++ GD+ +ST DTE N+
Sbjct: 1860 SMNNQTTGTGDDIISTTTDTESNT 1883
>At3g15150.1 68416.m01916 expressed protein
Length = 249
Score = 26.6 bits (56), Expect = 9.3
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = -1
Query: 481 MPGPXXEDDINDGSXWPLLEMSDP--GSAXLELI-PVLSISC 365
MPG ED + + PLL M+ P G EL PV S+ C
Sbjct: 137 MPGDDDEDIVMTSTQCPLLNMTCPLSGKPVTELADPVRSMDC 178
>At2g29820.1 68415.m03622 kelch repeat-containing F-box family
protein similar to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 388
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 94 DTEENSPQNDQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAI 228
D N+PQ +DNQ E EE E L + E P++ I I
Sbjct: 14 DDPNNNPQEGEDNQ-----NENPQEEVENLRNLLELPEELIERLI 53
>At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family
protein low similarity to ubiquitin-conjugating
BIR-domain enzyme APOLLON [Homo sapiens] GI:8489831,
ubiquitin-conjugating enzyme [Mus musculus] GI:3319990;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 1102
Score = 26.6 bits (56), Expect = 9.3
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = +1
Query: 34 SGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLDSM-IKEPE--SEEAEGLGDAEESP 204
+G++ S GD+ + EE +D+DN D ++E + SEE GD E+
Sbjct: 48 TGSVGVVSEVAGDSDSDSDISDEEEDDDDDEDNDDDDEDVEEGKKASEENVVNGDGEKKA 107
Query: 205 DQSISSAILPTD 240
D + L D
Sbjct: 108 DGNYKCGALEGD 119
>At1g56340.1 68414.m06476 calreticulin 1 (CRT1) identical to
calreticulin (crt1) GI:2052379 [Arabidopsis thaliana]
Length = 425
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +1
Query: 88 PADTEENSPQNDQDNQLDSMIKEPESE---EAEGLGDAEES 201
PA+++ D DN+ D E +SE EAE +AEE+
Sbjct: 378 PAESDAEEEAEDDDNEGDDSDNESKSEETKEAEETKEAEET 418
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240: Ubiquitin
family
Length = 1919
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 94 DTEENSPQNDQDNQLDSMIKEPES-EEAEGLGDAEES 201
D +EN +N+ ++ LDS + E+ +AE G+ EES
Sbjct: 1203 DGDENESENEANSDLDSFAGDLENLLDAEEGGEGEES 1239
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 70 DNCLSTPADTEENSPQNDQDNQLDSMIKEPESEEAEGLGDAE-ESPDQSISSAIL 231
DN + D E ++ D DN +EP + E D E E D++I+ ++L
Sbjct: 29 DNYPTASHDDEPSAADTDADNDEPHHTQEPSTSEDNTSNDQENEDIDRAIALSLL 83
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,888,188
Number of Sequences: 28952
Number of extensions: 124818
Number of successful extensions: 633
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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