Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0252.Seq
         (499 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q197G1 Cluster: Tail muscle elongation factor 1 gamma; ...    46   4e-04
UniRef50_P26641 Cluster: Elongation factor 1-gamma; n=207; Eumet...    38   0.095
UniRef50_P54412 Cluster: Probable elongation factor 1-gamma; n=4...    35   0.88 
UniRef50_UPI00006CFB3E Cluster: hypothetical protein TTHERM_0047...    32   6.2  
UniRef50_Q876X6 Cluster: Putative uncharacterized protein OrfH; ...    32   6.2  
UniRef50_A7P301 Cluster: Chromosome chr1 scaffold_5, whole genom...    32   8.2  
UniRef50_Q8ILC9 Cluster: Putative uncharacterized protein; n=1; ...    32   8.2  

>UniRef50_Q197G1 Cluster: Tail muscle elongation factor 1 gamma;
           n=1; Procambarus clarkii|Rep: Tail muscle elongation
           factor 1 gamma - Procambarus clarkii (Red swamp
           crayfish)
          Length = 451

 Score = 46.4 bits (105), Expect = 4e-04
 Identities = 20/34 (58%), Positives = 23/34 (67%)
 Frame = -3

Query: 428 DPSS*KXKKLVQDNFSWNGTDKDGRKFNQGKIFK 327
           DP++ + KKLV   F W G D  GRKFN GKIFK
Sbjct: 418 DPNADETKKLVDQYFKWIGEDNKGRKFNDGKIFK 451


>UniRef50_P26641 Cluster: Elongation factor 1-gamma; n=207;
           Eumetazoa|Rep: Elongation factor 1-gamma - Homo sapiens
           (Human)
          Length = 437

 Score = 38.3 bits (85), Expect = 0.095
 Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = -3

Query: 428 DPSS*KXKKLVQDNFSWNGTDKD-GRKFNQGKIFK 327
           DP S + + LV++ FSW G  +  G+ FNQGKIFK
Sbjct: 403 DPGSEETQTLVREYFSWEGAFQHVGKAFNQGKIFK 437


>UniRef50_P54412 Cluster: Probable elongation factor 1-gamma; n=4;
           Caenorhabditis|Rep: Probable elongation factor 1-gamma -
           Caenorhabditis elegans
          Length = 398

 Score = 35.1 bits (77), Expect = 0.88
 Identities = 18/34 (52%), Positives = 20/34 (58%)
 Frame = -3

Query: 428 DPSS*KXKKLVQDNFSWNGTDKDGRKFNQGKIFK 327
           D  S   KK V +   W G D  G+KFNQGKIFK
Sbjct: 366 DAKSDATKKEVNEYLMWEG-DFGGKKFNQGKIFK 398


>UniRef50_UPI00006CFB3E Cluster: hypothetical protein TTHERM_00471980;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00471980 - Tetrahymena thermophila SB210
          Length = 1770

 Score = 32.3 bits (70), Expect = 6.2
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -1

Query: 403  NLSRTTSRGTEPTKTVESSTRARYSSECRXTSSQCIHISYNNYKKLYKKEHSNVNR 236
            N SRT  R   P+  +  S   R +     TS Q ++ SY N  + YK +++N +R
Sbjct: 894  NESRTERRNPTPSNIINQSYTQRENINTPSTS-QILNQSYTNINQSYKNQYNNEHR 948


>UniRef50_Q876X6 Cluster: Putative uncharacterized protein OrfH;
           n=2; Hypocreales|Rep: Putative uncharacterized protein
           OrfH - Fusarium sporotrichioides
          Length = 540

 Score = 32.3 bits (70), Expect = 6.2
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 235 TYLHLNVLFCKVFYSYCMKCVYIGWTXVGIHLNILPWLNFLPSLSVP 375
           +Y ++N+L  KV   YC   +   W  +  HL++L W   + SL+VP
Sbjct: 330 SYHNINLLASKVNPDYCSHKLCRTWLTMRGHLSLLYWPRNITSLAVP 376


>UniRef50_A7P301 Cluster: Chromosome chr1 scaffold_5, whole genome
           shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
           chr1 scaffold_5, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 81

 Score = 31.9 bits (69), Expect = 8.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 270 NFTKKNIQM*IGGCWQFSELSSIYXIFIKTSVINDFQSPCIHK 142
           +F KK  ++ +   W F E SS+Y  F+    IN     C H+
Sbjct: 3   HFKKKKYRLDLVSIWFFDEFSSLYLRFLNIKPINYLTMVCYHQ 45


>UniRef50_Q8ILC9 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 5561

 Score = 31.9 bits (69), Expect = 8.2
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +1

Query: 142  LMYTRRLKIIYY*XFNKNXINXGQFRKLPTSTYLHLNVLF-CKVFYSYCMKCV 297
            ++Y RR   +YY   N+   N     K     YL+ N  + C + Y Y  KCV
Sbjct: 5164 ILYNRRNTNLYYYNLNRKKNNYKIIIKDRIKKYLNKNTCYICNLSYGYTQKCV 5216


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 425,321,591
Number of Sequences: 1657284
Number of extensions: 7326198
Number of successful extensions: 16628
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16625
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)