Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0252.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    28   0.68 
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    26   2.7  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    25   6.3  
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    25   8.4  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.4  

>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 28.3 bits (60), Expect = 0.68
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -1

Query: 397  SRTTSRGTEPTKTVESSTRARYSSECRXTSS 305
            S TTS  T  + T+ SSTR+  +SE   TSS
Sbjct: 987  SSTTSGLTSSSSTIPSSTRSESNSESASTSS 1017


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 238 YLHLNVLFCKVFYSYCMKCVYI 303
           ++H NV  C  FYSY   C ++
Sbjct: 277 FIHNNVRGCSYFYSYQAVCTFL 298


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 229 TSTYLHLNVLFCKVFYSYCMKCVYIGWTXVGIHLNILPWLNFL 357
           T+ +L   V    VF + C+K + IG   +   + I+ WL +L
Sbjct: 201 TAVFLAQCVKVTAVFLAQCVKVISIGLFNIRREMMIIIWLLWL 243


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 247 LNVLFCKVFYSYCMKCVYIGWTXVGIHLN 333
           +N +    F  +CM C Y+ +T V   LN
Sbjct: 58  INAMVPSTFALFCMACPYLLYTAVDALLN 86


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 234 GCWQFSELSSIYXIFIKTSVINDFQSPCIHKCS 136
           G W  +E   +     KT+ +NDF S   H C+
Sbjct: 221 GIWDIAEYPLMMGNVSKTTSVNDFWSRDWHVCT 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,830,706
Number of Sequences: 5004
Number of extensions: 33806
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)