Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0252.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0354 + 16159825-16160192,16160408-16160600,16160794-16160799     29   1.6  
08_02_0334 + 15867947-15868314,15868530-15868722,15868912-15868917     29   1.6  
08_02_0338 + 15916813-15917180,15917396-15917588,15917778-15917783     29   2.7  
02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,606...    27   8.4  

>08_02_0354 + 16159825-16160192,16160408-16160600,16160794-16160799
          Length = 188

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 195 IFIKTSVINDFQSPCIHKCSAENDXALH 112
           + +K +++ D   PC  KCS EN+ +LH
Sbjct: 18  VLVKANILGDIY-PCPCKCSQENETSLH 44


>08_02_0334 + 15867947-15868314,15868530-15868722,15868912-15868917
          Length = 188

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 195 IFIKTSVINDFQSPCIHKCSAENDXALH 112
           + +K +++ D   PC  KCS EN+ +LH
Sbjct: 18  VLVKANILGDIY-PCPCKCSQENETSLH 44


>08_02_0338 + 15916813-15917180,15917396-15917588,15917778-15917783
          Length = 188

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 195 IFIKTSVINDFQSPCIHKCSAENDXALH 112
           + +K ++  D   PC  KCS EN+ +LH
Sbjct: 18  VLVKANIFGDIY-PCPCKCSQENETSLH 44


>02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,
            6069207-6069291,6069421-6069580,6069667-6069743,
            6069848-6069898,6069979-6070069,6070167-6070468,
            6070549-6070830,6070911-6071388,6071457-6071560,
            6071647-6071809,6071895-6072017,6072099-6072217,
            6072304-6072636,6072713-6073003,6073088-6073171,
            6073260-6073393,6073478-6073705,6073795-6073966,
            6074062-6074316,6074408-6074668
          Length = 1444

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 226  PTSTYLHLNVLFCKVFYSYCMKCVY 300
            P ST LH    F + F++ CM C++
Sbjct: 1154 PGSTDLHFPTQFSQPFFTQCMACLW 1178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,276,146
Number of Sequences: 37544
Number of extensions: 192138
Number of successful extensions: 351
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)