Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0252.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037)                    30   1.2  
SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)                 30   1.2  
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  

>SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037)
          Length = 703

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = -1

Query: 397 SRTTSRGTEPTKTVESSTRARYSSECRXTSSQ 302
           SRT SRG EPTKT  S + AR     R +S Q
Sbjct: 668 SRTLSRGREPTKTSLSKSPARPGVAKRSSSLQ 699


>SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)
          Length = 203

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 428 DPSS*KXKKLVQDNF-SWNGTDKDGRKFNQGKIFK 327
           +P     KKL++D F         G+KFNQGK+FK
Sbjct: 169 NPDDPADKKLIEDYFIQREELTYRGKKFNQGKVFK 203


>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3142

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 367 TKTVESSTRARYSSEC-RXTSSQCIHISYNNY 275
           TK  +S+ RA    EC + T ++CI +SYN+Y
Sbjct: 215 TKPTKSNQRAICCDECGQWTHAKCISMSYNSY 246


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,529,391
Number of Sequences: 59808
Number of extensions: 240825
Number of successful extensions: 548
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)