Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0252.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72507-15|CAJ55245.1|  365|Caenorhabditis elegans Hypothetical p...    35   0.029
Z72507-7|CAD56569.1|  373|Caenorhabditis elegans Hypothetical pr...    35   0.029
Z72507-6|CAA96631.1|  398|Caenorhabditis elegans Hypothetical pr...    35   0.029
U53180-3|AAA96284.1|  727|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AL031627-6|CAA20958.1|  338|Caenorhabditis elegans Hypothetical ...    27   5.7  

>Z72507-15|CAJ55245.1|  365|Caenorhabditis elegans Hypothetical
           protein F17C11.9c protein.
          Length = 365

 Score = 35.1 bits (77), Expect = 0.029
 Identities = 18/34 (52%), Positives = 20/34 (58%)
 Frame = -3

Query: 428 DPSS*KXKKLVQDNFSWNGTDKDGRKFNQGKIFK 327
           D  S   KK V +   W G D  G+KFNQGKIFK
Sbjct: 333 DAKSDATKKEVNEYLMWEG-DFGGKKFNQGKIFK 365


>Z72507-7|CAD56569.1|  373|Caenorhabditis elegans Hypothetical
           protein F17C11.9b protein.
          Length = 373

 Score = 35.1 bits (77), Expect = 0.029
 Identities = 18/34 (52%), Positives = 20/34 (58%)
 Frame = -3

Query: 428 DPSS*KXKKLVQDNFSWNGTDKDGRKFNQGKIFK 327
           D  S   KK V +   W G D  G+KFNQGKIFK
Sbjct: 341 DAKSDATKKEVNEYLMWEG-DFGGKKFNQGKIFK 373


>Z72507-6|CAA96631.1|  398|Caenorhabditis elegans Hypothetical
           protein F17C11.9a protein.
          Length = 398

 Score = 35.1 bits (77), Expect = 0.029
 Identities = 18/34 (52%), Positives = 20/34 (58%)
 Frame = -3

Query: 428 DPSS*KXKKLVQDNFSWNGTDKDGRKFNQGKIFK 327
           D  S   KK V +   W G D  G+KFNQGKIFK
Sbjct: 366 DAKSDATKKEVNEYLMWEG-DFGGKKFNQGKIFK 398


>U53180-3|AAA96284.1|  727|Caenorhabditis elegans Hypothetical
           protein D1014.5 protein.
          Length = 727

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -1

Query: 388 TSRGTEPTKTVESSTRARYSSECRXTSSQCIHISYN--NYKKLYKKEHSNVNRW 233
           T + TE T TVE++ R          ++Q    SYN    KK Y+K    V  W
Sbjct: 334 TKKVTEETTTVETTERQNVDDTTENQTTQTTSSSYNAKEEKKSYRK--CKVEEW 385


>AL031627-6|CAA20958.1|  338|Caenorhabditis elegans Hypothetical
           protein Y102A5C.15 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +1

Query: 229 TSTYLHLNVLFCKVFYSYCMKCVYIGWTXVGIHLNILPWLNFLPSLSVPF 378
           T T  HL  L+C + Y    +   + W  + +H++++ + N +  L +PF
Sbjct: 28  TVTPFHLLGLYC-ILYKTPAQMKAVKWYLLNLHVSVMFFDNSVTLLGIPF 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,296,141
Number of Sequences: 27780
Number of extensions: 194836
Number of successful extensions: 494
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)