Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0252.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24280.1 68418.m02856 expressed protein ; expression supporte...    29   2.3  
At3g03010.1 68416.m00296 expressed protein                             28   4.0  
At2g40300.1 68415.m04964 ferritin, putative similar to ferritin ...    28   4.0  
At3g06030.1 68416.m00688 NPK1-related protein kinase, putative (...    27   5.3  
At4g09160.1 68417.m01517 SEC14 cytosolic factor family protein /...    27   9.3  
At1g55350.4 68414.m06326 calpain-type cysteine protease family i...    27   9.3  
At1g55350.3 68414.m06325 calpain-type cysteine protease family i...    27   9.3  
At1g55350.2 68414.m06324 calpain-type cysteine protease family i...    27   9.3  
At1g55350.1 68414.m06323 calpain-type cysteine protease family i...    27   9.3  

>At5g24280.1 68418.m02856 expressed protein ; expression supported by
            MPSS
          Length = 1634

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 189  IKTSVINDFQSPCIHKCSAENDXALHEKMIXXAFI 85
            + TS+ +D +S C H  S E+D +  E  I  AF+
Sbjct: 1155 LDTSIHHDEKSGCFHTMSIESDSSSVESAIRYAFV 1189


>At3g03010.1 68416.m00296 expressed protein
          Length = 179

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 310 SSQCIHISYNNYKKLYKKEHSNVNRW 233
           ++QC H +   YKKL ++    +NRW
Sbjct: 84  AAQCSHATLGLYKKLLQRAPKALNRW 109


>At2g40300.1 68415.m04964 ferritin, putative similar to ferritin
           subunit cowpea2 precursor [Vigna unguiculata]
           GI:2970654; contains Pfam profile PF00210: Ferritin-like
           domain
          Length = 259

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -1

Query: 370 PTKTVESSTRARYSSECRXTSSQCIHISYNNYKKLYKKEHSNVNRWMLAIFG 215
           PT +  S  R +YS EC    ++ I++ Y N   +Y   ++  +R  +A+ G
Sbjct: 81  PTSSHLSLARQKYSDECEAAINEQINVEY-NVSYVYHAMYAYFDRDNIALKG 131


>At3g06030.1 68416.m00688 NPK1-related protein kinase, putative
           (ANP3) similar to protein kinase [Nicotiana tabacum]
           gi|456309|dbj|BAA05648; identical to cDNA NPK1-related
           protein kinase 3 GI:2342426
          Length = 651

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 403 NLSRTTSRGTEPTKTVESSTRARYSSEC 320
           N SR    GTEPT+  ES+ +   +S C
Sbjct: 585 NTSRVMQSGTEPTQVNESTKKGVNNSRC 612


>At4g09160.1 68417.m01517 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein similar to
           polyphosphoinositide binding protein Ssh1p (GI:2739044)
           {Glycine max}; similar to polyphosphoinositide binding
           protein Ssh2, Glycine max, gb:T05953; contains Pfam
           PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminus
          Length = 668

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 328 SECRXTSSQCIHISYNNYKKLYKKE-HSNVNRWMLAIF 218
           +E R  + Q +H+  +NY +   K+   NV  W LA +
Sbjct: 467 TELRLATKQALHLLQDNYPEFVSKQIFINVPWWYLAFY 504


>At1g55350.4 68414.m06326 calpain-type cysteine protease family
            identical to calpain-like protein GI:20268660 from
            [Arabidopsis thaliana]; contains Pfam profiles: PF00648
            Calpain family cysteine protease, PF01067 Calpain large
            subunit,domain III; identical to cDNA calpain-like
            protein GI:20268659
          Length = 2151

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = -3

Query: 464  RWXTSPTTVXXXDPSS*KXKKLVQDNFSWNGTDKDGRKFNQGKIF 330
            +W  SP  V   D          +D+  W+G    GRK   G+ F
Sbjct: 1607 QWTDSPPRVDGWDSDPADVDLYDRDDVDWDGQYSSGRKRRSGRDF 1651


>At1g55350.3 68414.m06325 calpain-type cysteine protease family
            identical to calpain-like protein GI:20268660 from
            [Arabidopsis thaliana]; contains Pfam profiles: PF00648
            Calpain family cysteine protease, PF01067 Calpain large
            subunit,domain III; identical to cDNA calpain-like
            protein GI:20268659
          Length = 2151

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = -3

Query: 464  RWXTSPTTVXXXDPSS*KXKKLVQDNFSWNGTDKDGRKFNQGKIF 330
            +W  SP  V   D          +D+  W+G    GRK   G+ F
Sbjct: 1607 QWTDSPPRVDGWDSDPADVDLYDRDDVDWDGQYSSGRKRRSGRDF 1651


>At1g55350.2 68414.m06324 calpain-type cysteine protease family
            identical to calpain-like protein GI:20268660 from
            [Arabidopsis thaliana]; contains Pfam profiles: PF00648
            Calpain family cysteine protease, PF01067 Calpain large
            subunit,domain III; identical to cDNA calpain-like
            protein GI:20268659
          Length = 2151

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = -3

Query: 464  RWXTSPTTVXXXDPSS*KXKKLVQDNFSWNGTDKDGRKFNQGKIF 330
            +W  SP  V   D          +D+  W+G    GRK   G+ F
Sbjct: 1607 QWTDSPPRVDGWDSDPADVDLYDRDDVDWDGQYSSGRKRRSGRDF 1651


>At1g55350.1 68414.m06323 calpain-type cysteine protease family
            identical to calpain-like protein GI:20268660 from
            [Arabidopsis thaliana]; contains Pfam profiles: PF00648
            Calpain family cysteine protease, PF01067 Calpain large
            subunit,domain III; identical to cDNA calpain-like
            protein GI:20268659
          Length = 2151

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = -3

Query: 464  RWXTSPTTVXXXDPSS*KXKKLVQDNFSWNGTDKDGRKFNQGKIF 330
            +W  SP  V   D          +D+  W+G    GRK   G+ F
Sbjct: 1607 QWTDSPPRVDGWDSDPADVDLYDRDDVDWDGQYSSGRKRRSGRDF 1651


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,331,547
Number of Sequences: 28952
Number of extensions: 166799
Number of successful extensions: 362
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)