Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0251.Seq
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   2.3  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   9.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   9.4  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 157  AVINPRNLQISDYRTRFHGIQAQDLSRGLHIKVF 258
            + I  +NLQ+++     H I AQD      I++F
Sbjct: 1381 STIEEKNLQVNESGKLIHKIDAQDCDFVDEIEMF 1414


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 325 LKLLETS*PTKRQFFNIRLTA*RTL 251
           L  L+ +   KRQF +I L + RTL
Sbjct: 152 LLFLDYNPSQKRQFLHITLASGRTL 176


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 124 IVNEDKICVYNAVINP 171
           IV + ++C+ N VINP
Sbjct: 606 IVPKLQLCMQNLVINP 621


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,476
Number of Sequences: 336
Number of extensions: 2593
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)