Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0251.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|...    50   3e-07
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    26   4.2  
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    25   7.3  
SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple...    25   9.7  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    25   9.7  

>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 49.6 bits (113), Expect = 3e-07
 Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 5/114 (4%)
 Frame = +3

Query: 171 KKLTDFRLPHTFSWNTGSGSVKRL---THQSVRQAVSRILKNCLLVGYDVSRSLRLLGLG 341
           +K+TD+R     +W +G  S       + + V+  V++IL N +LVG+ V   L++L L 
Sbjct: 132 EKVTDWR-----TWVSGVKSFHMRDAPSFEKVQAEVAKILDNRVLVGHAVHNDLKVLLLS 186

Query: 342 HPEDNIRDVSTYHLYTR-XKXYNPTLXQLXRSYLSRGLEA-PRTAVKDATAXMD 497
           HP   IRD S +  Y +  K   P L +L    L R +++   ++V+DA A M+
Sbjct: 187 HPRRMIRDTSRFSGYRKLAKGRTPGLKKLAEVILGRDIQSGQHSSVQDAQATME 240


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 171 WVNDSVINAYLVLVYDSHRRGVISDTFRGFHT 76
           W+ND VIN Y+ L+ +  +         GF+T
Sbjct: 392 WLNDEVINFYMNLISERSKIDSSLPRVHGFNT 423


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -3

Query: 390 LYKDDTWKHLLYYLLGAPDPIASSFSKHHSLLRDNFLIS-DSQ 265
           +Y +  W H  Y L      ++ S  +  + L+D  L + D+Q
Sbjct: 176 IYNNSAWNHRFYVLFETSKVVSWSLEEELNYLKDKILFAPDNQ 218


>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
           subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 447

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -3

Query: 387 YKDDTWKHLLYYLLGAPD 334
           Y  +TW+ +L++++G P+
Sbjct: 134 YAKETWETILHFMVGTPE 151


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +3

Query: 345 PEDN-IRDVSTYHL--YTRXKXYNPTLXQLXRSYLSRGLEAPRTAVKDATA 488
           PE+N +R  +T  L  YT     +    +L  +Y+S G E     V+ A A
Sbjct: 482 PENNKVRYAATLFLGRYTEWTAQHSEFLELQLNYISAGFEVANKEVQSAAA 532


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,162,941
Number of Sequences: 5004
Number of extensions: 42522
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)