Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0251.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0490 - 17724878-17725045,17725264-17725342,17725434-177254...    44   1e-04
02_05_0476 + 29337124-29337158,29338460-29338669,29338760-293389...    31   0.61 
01_05_0138 + 18516689-18518161                                         28   5.6  
12_01_0552 + 4469009-4469080,4470052-4470117,4470808-4470941,447...    27   7.5  

>08_02_0490 -
           17724878-17725045,17725264-17725342,17725434-17725498,
           17725569-17725657,17725750-17725858,17725969-17726047,
           17727247-17727512
          Length = 284

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
 Frame = +3

Query: 255 VRQAVSRILKNCLLVGYDVSRSLRLLGLGHPEDNIRDVSTYHLYTRXKXYNPTLXQLXRS 434
           V++ V+ ++K  +LVG+ +   L++L LGHP+ +IRD S Y ++ R +    +L  L   
Sbjct: 158 VQKDVAELIKGRILVGHALHHDLKVLLLGHPKKDIRDTSEYEVF-RREGKRRSLKDLTAQ 216

Query: 435 YLSRGL-EAPRTAVKDATAXM 494
            L   + +     ++DA A M
Sbjct: 217 VLGAKIQQKEHCPIEDARAAM 237


>02_05_0476 +
           29337124-29337158,29338460-29338669,29338760-29338936,
           29338937-29339165
          Length = 216

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 291 LLVGYDVSRSLRLLGLGHPEDNIRDVSTYHLYTRXKXYNPTLXQLXRSYL 440
           +LVG+ +   L  LGL +P   IRD + Y    +    + +L  L ++YL
Sbjct: 59  ILVGHGLEHELERLGLEYPAFMIRDTAKYPPLMKTSKLSNSLKYLTQAYL 108


>01_05_0138 + 18516689-18518161
          Length = 490

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +2

Query: 68  NRSVWNPLKVSEITPRLWLS*TRTRYAFITLSLTQETYRFQITAH 202
           +RS + P+++  + P L  S   +RY  ++ +      R+ +TAH
Sbjct: 242 HRSFFMPMRIETVMPHLRESADMSRYLVVSRNKLLMVVRYYVTAH 286


>12_01_0552 +
           4469009-4469080,4470052-4470117,4470808-4470941,
           4471073-4471179,4471695-4471802,4471879-4471949,
           4472126-4472185,4472264-4472319,4472663-4472723,
           4472809-4473076,4473174-4473355,4473444-4473736,
           4474048-4474138
          Length = 522

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 118 VAIVNEDKICVYNAVINPRNLQISDYRTRFHGIQAQDLS 234
           V +V+     V + ++ P N  I+DY TRF GI A+ L+
Sbjct: 198 VTLVDIKGEVVLDKLVKPAN-PITDYNTRFSGITAEMLA 235


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,997,157
Number of Sequences: 37544
Number of extensions: 268706
Number of successful extensions: 558
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)