Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0251.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31090| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   4e-05
SB_35066| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)         27   7.6  

>SB_31090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 502

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 26/71 (36%), Positives = 39/71 (54%)
 Frame = +1

Query: 52  VSIDCKSIGVESSEGIRNYPASVAIVNEDKICVYNAVINPRNLQISDYRTRFHGIQAQDL 231
           ++IDC+ +GV  SEG ++  A V+IVN     VY+  + P   ++ DYRT   GI++ DL
Sbjct: 122 IAIDCEFVGV-GSEGAKHMLARVSIVNSHGRVVYDKYVAPEE-RVIDYRTAVSGIRSLDL 179

Query: 232 SRGLHIKVFVK 264
                 K   K
Sbjct: 180 KDAPDFKTVQK 190



 Score = 37.5 bits (83), Expect = 0.007
 Identities = 16/43 (37%), Positives = 29/43 (67%)
 Frame = +3

Query: 249 QSVRQAVSRILKNCLLVGYDVSRSLRLLGLGHPEDNIRDVSTY 377
           ++V++ VS IL+  +++G+ +   L++L L HP  +IRD S Y
Sbjct: 186 KTVQKEVSDILQGRIVIGHALKHDLQVLFLAHPRKDIRDTSKY 228


>SB_35066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +3

Query: 222 SGSVKRLTHQSVRQAVSRILKNCLLVGYDVSRSLRLLGLGHPED-NIRDVSTYHLY 386
           + SV   T Q V ++V  + KNC L   D+  + R++ + HP+  +I  +   +LY
Sbjct: 28  NSSVNYATIQDVIRSVMSVGKNCYLAKTDIKNAFRIIPV-HPDGYSILGICLDYLY 82


>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
          Length = 1692

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 489  QRWHPSQQYVGPPSHVTSNFSXTX*ALDCTXXTLYKDDTW 370
            Q+W  S  ++  P+ +  N+      L  T  TL KD+ W
Sbjct: 924  QQWITSYPWLTDPTTLPDNYDIALATLKKTEHTLLKDEQW 963


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,177,522
Number of Sequences: 59808
Number of extensions: 311053
Number of successful extensions: 633
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)