Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0251.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z81562-5|CAB04555.1|  408|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AC006664-1|AAF39902.2|  298|Caenorhabditis elegans Serpentine re...    28   5.1  
AF000194-3|AAK39379.1|  191|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical
           protein C44H9.4 protein.
          Length = 1099

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 357 YYLLGAPDPIASSFSKHHSLLRDNFL--ISDSQLDE 256
           ++ L APD I S+    H+LL +N L  +S+ Q DE
Sbjct: 719 FFALYAPDIIVSTADSIHNLLENNVLRDVSNIQFDE 754


>Z81562-5|CAB04555.1|  408|Caenorhabditis elegans Hypothetical
           protein K03D7.8 protein.
          Length = 408

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 279 LKNCLLVGYDVSRSLRLLGLGHPEDNIRD 365
           +  C LV YD+S +LRL+G  H ED + +
Sbjct: 83  VSGCSLVFYDISFALRLVG-EHKEDTLSE 110


>AC006664-1|AAF39902.2|  298|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 40 protein.
          Length = 298

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -3

Query: 159 SVINAYLVLVYDSHRRGVISDT---FRGFHTD 73
           SVIN YLVL++ S RR   S+    F  FH D
Sbjct: 19  SVINVYLVLMFRSQRRHQTSELTQFFYRFHLD 50


>AF000194-3|AAK39379.1|  191|Caenorhabditis elegans Hypothetical
           protein ZC328.5 protein.
          Length = 191

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 206 FMEYRLRICQEAYTSKCSSSCESDIK 283
           F +Y + +   A   +CS +CE+D+K
Sbjct: 66  FEDYAMGVTTAASVPECSKTCETDVK 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,903,560
Number of Sequences: 27780
Number of extensions: 237190
Number of successful extensions: 539
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)