Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0251.Seq
(548 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g48100.2 68415.m06021 exonuclease family protein contains Pfa... 41 5e-04
At2g48100.1 68415.m06020 exonuclease family protein contains Pfa... 41 5e-04
At3g15080.1 68416.m01907 exonuclease family protein contains exo... 40 0.001
At5g05540.1 68418.m00601 exonuclease family protein contains exo... 33 0.13
At3g50100.1 68416.m05477 exonuclease family protein contains exo... 32 0.22
At5g67240.1 68418.m08475 exonuclease family protein contains exo... 29 2.7
At3g27970.1 68416.m03491 exonuclease family protein contains exo... 29 2.7
At5g17880.1 68418.m02097 disease resistance protein (TIR-NBS-LRR... 28 4.7
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec... 28 4.7
At5g50860.1 68418.m06302 protein kinase family protein contains ... 27 6.2
At3g06910.1 68416.m00820 Ulp1 protease family protein similar to... 27 6.2
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:... 27 8.3
>At2g48100.2 68415.m06021 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 41.1 bits (92), Expect = 5e-04
Identities = 19/68 (27%), Positives = 42/68 (61%)
Frame = +1
Query: 49 AVSIDCKSIGVESSEGIRNYPASVAIVNEDKICVYNAVINPRNLQISDYRTRFHGIQAQD 228
A+++DC+ +G ++G + ASV +V++D+ +++ + P L ++DYR G+ +D
Sbjct: 132 AMALDCEMVG-GGADGTIDQCASVCLVDDDENVIFSTHVQPL-LPVTDYRHEITGLTKED 189
Query: 229 LSRGLHIK 252
L G+ ++
Sbjct: 190 LKDGMPLE 197
Score = 32.7 bits (71), Expect = 0.17
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 291 LLVGYDVSRSLRLLGLGHPEDNIRDVSTYHLYTRXKXYNPTLXQLXRSYLSRGLEAPRTA 470
LLVG+D+ + L L +P +RD + Y + + +L L +SYL ++ +
Sbjct: 219 LLVGHDLRHDMSCLKLEYPSHLLRDTAKYVPLMKTNLVSQSLKYLTKSYLGYKIQCGKHE 278
Query: 471 V-KDATAXM 494
V +D + M
Sbjct: 279 VYEDCVSAM 287
>At2g48100.1 68415.m06020 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 41.1 bits (92), Expect = 5e-04
Identities = 19/68 (27%), Positives = 42/68 (61%)
Frame = +1
Query: 49 AVSIDCKSIGVESSEGIRNYPASVAIVNEDKICVYNAVINPRNLQISDYRTRFHGIQAQD 228
A+++DC+ +G ++G + ASV +V++D+ +++ + P L ++DYR G+ +D
Sbjct: 132 AMALDCEMVG-GGADGTIDQCASVCLVDDDENVIFSTHVQPL-LPVTDYRHEITGLTKED 189
Query: 229 LSRGLHIK 252
L G+ ++
Sbjct: 190 LKDGMPLE 197
Score = 32.7 bits (71), Expect = 0.17
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 291 LLVGYDVSRSLRLLGLGHPEDNIRDVSTYHLYTRXKXYNPTLXQLXRSYLSRGLEAPRTA 470
LLVG+D+ + L L +P +RD + Y + + +L L +SYL ++ +
Sbjct: 219 LLVGHDLRHDMSCLKLEYPSHLLRDTAKYVPLMKTNLVSQSLKYLTKSYLGYKIQCGKHE 278
Query: 471 V-KDATAXM 494
V +D + M
Sbjct: 279 VYEDCVSAM 287
>At3g15080.1 68416.m01907 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 275
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/72 (29%), Positives = 40/72 (55%)
Frame = +1
Query: 40 MADAVSIDCKSIGVESSEGIRNYPASVAIVNEDKICVYNAVINPRNLQISDYRTRFHGIQ 219
+ D V++DC+ +GV S+G ++ V +VN+ +Y+ + P + D+RT GI+
Sbjct: 80 LTDEVAMDCEMVGV--SQGTKSALGRVTLVNKWGNVLYDEFVRPVE-HVVDFRTSISGIR 136
Query: 220 AQDLSRGLHIKV 255
+DL + +V
Sbjct: 137 PRDLRKAKDFRV 148
Score = 35.9 bits (79), Expect = 0.018
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +3
Query: 267 VSRILKNCLLVGYDVSRSLRLLGLGHPEDNIRDVSTYHLYTRXKXYNPTLXQLXRSYLSR 446
V+ ++K +LVG+ + L+ L L HP+ +IRD Y + + K +L L L
Sbjct: 153 VAELIKGKILVGHALHNDLKALLLTHPKKDIRDTGEYQPFLKGKT-RKSLKHLASEILGA 211
Query: 447 GLE-APRTAVKDATAXM 494
++ + DA A M
Sbjct: 212 DIQNGEHCPIDDARAAM 228
>At5g05540.1 68418.m00601 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 466
Score = 33.1 bits (72), Expect = 0.13
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 46 DAVSIDCKSIGVES-SEGIRNYPASVAIVNEDKICVYNAVINPRNLQISDYRTRFHGIQA 222
+ ++IDC+ + E SE + VA V+ D + + + P N + DYRT G+ A
Sbjct: 141 EMIAIDCEMVLCEDGSEAV----VRVAAVDRDLKVILDEFVKP-NQPVVDYRTFITGLTA 195
Query: 223 QDLSR 237
QDL +
Sbjct: 196 QDLEK 200
>At3g50100.1 68416.m05477 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 406
Score = 32.3 bits (70), Expect = 0.22
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +3
Query: 291 LLVGYDVSRSLRLLGLGHPEDNIRDVSTYHLY-TRXKXYNPTLXQLXRSYLS---RGLEA 458
+LVG+ ++R L +L + HP+ + D + Y K P+L L +S L R
Sbjct: 219 ILVGHSLNRDLEVLKIDHPK--VIDTALVFKYPNTRKLRRPSLNNLCKSILGYEVRKTGV 276
Query: 459 PRTAVKDATAXM 494
P V DA+A M
Sbjct: 277 PHDCVHDASAAM 288
Score = 31.9 bits (69), Expect = 0.29
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 52 VSIDCKSIGVES-SEGIRNYPASVAIVNEDKICVYNAVINPRNLQISDYRTRFHGIQAQD 228
V++DC+ + E +EG+ V +V+ D + + + P N + DYRT GI A+D
Sbjct: 141 VAVDCEMVLCEDGTEGL----VRVGVVDRDLKVILDEFVKP-NKPVVDYRTDITGITAED 195
Query: 229 L 231
+
Sbjct: 196 I 196
>At5g67240.1 68418.m08475 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 745
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +1
Query: 52 VSIDCKSIGVESSEGIRNYPASVAIVNEDKICVYNAVINPRNLQISDYRTRFHGIQAQDL 231
+SIDC+ + E V V+ D V + + P + + DY+T G+ A+DL
Sbjct: 146 LSIDCEMVTCEDGSQAL---VRVGAVDRDLKVVLDKFVKP-DKPVIDYKTDITGVTAEDL 201
Query: 232 SR 237
R
Sbjct: 202 ER 203
>At3g27970.1 68416.m03491 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 354
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 291 LLVGYDVSRSLRLLGLGHPEDNIRDVSTYHLYTRXKXYNPTLXQLXRSYL 440
+LVG+ + L L L +P IRD + Y + + +L L ++YL
Sbjct: 225 ILVGHGLDHDLDRLQLEYPSSMIRDTAKYPPLMKTSKLSNSLKYLTQAYL 274
>At5g17880.1 68418.m02097 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1197
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 152 ITLSLTQETYRFQITAHVFMEYRLRICQEAYTSKCSSSCESDIK 283
I L L+ T ++ H F R + Y++ C CESDIK
Sbjct: 560 IFLDLSDITRKWCFYRHAFAMMRDLRYLKIYSTHCPQECESDIK 603
>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
receptor (PEX7) identical to peroxisomal targeting
signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
thaliana]; WD-40 repeat protein family member; contains
6 WD-40 repeats (PF00400); similar to peroxismal
targeting signal 2 receptor (PTS2R) (Peroxin-7)
(PEX7)(SP:O00628) [Homo sapiens]
Length = 317
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 109 PASVAIVNEDKICVYNAVINPRN 177
PASV E CVY AV NP++
Sbjct: 139 PASVRTFKEHAYCVYQAVWNPKH 161
>At5g50860.1 68418.m06302 protein kinase family protein contains
PF00069: Protein kinase domain
Length = 580
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 260 SSCESDIKKLSLSRL*CFEKLEAIGSGAPRR*YK 361
++C IK L+ R +EKLE IG G YK
Sbjct: 97 AACGDSIKDLTPRRATTYEKLEKIGQGTYSNVYK 130
>At3g06910.1 68416.m00820 Ulp1 protease family protein similar to
sentrin/SUMO-specific protease [Homo sapiens]
GI:6906859; contains Pfam profile PF02902: Ulp1 protease
family, C-terminal catalytic domain
Length = 502
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 171 WVNDSVINAYLVLVYDSHRR 112
W+ND VIN Y+VL+ + R
Sbjct: 315 WLNDEVINLYMVLLKEREAR 334
>At1g04600.1 68414.m00454 myosin, putative similar to myosin
(GI:499047) [Arabidopsis thaliana]
Length = 1730
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 173 ETYRFQITA-HVFMEYRLRICQEAYTSKCSSSC 268
ET R + + + + R ICQ AY + CSS+C
Sbjct: 778 ETMRREAASLRIQKQARTYICQNAYKTLCSSAC 810
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,312,314
Number of Sequences: 28952
Number of extensions: 222015
Number of successful extensions: 520
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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