Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0250.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    46   4e-06
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    29   0.64 
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   2.6  
SPBPJ4664.03 |mfm3||M-factor precursor Mfm3|Schizosaccharomyces ...    26   6.0  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   7.9  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 21/46 (45%), Positives = 30/46 (65%)
 Frame = -1

Query: 389 AKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGML 252
           A+L+E  P++V VF+ N    +K IL  FK+  F+ GESMD D M+
Sbjct: 97  ARLQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPDAMV 142



 Score = 30.3 bits (65), Expect = 0.28
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -3

Query: 255 VAMMEYRDFDGTQIPIMMFFKHGLEEEKF 169
           V +M YR+ DG   P M+FFK GL  EKF
Sbjct: 142 VVLMNYRE-DGIT-PYMIFFKDGLVSEKF 168


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +2

Query: 128 ASLELLSYFLSNI*NFSSSRPCLKNIMIGICVPSKSLY 241
           AS ELL+       NFS+ R CL+N ++  CVP   +Y
Sbjct: 781 ASFELLNNLTEARKNFSNYRDCLENCVLP-CVPFLGVY 817


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -1

Query: 380  EEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMLP*WNIE 234
            E+   +Q E  K+   +  K++     EL+    E++D DG     N+E
Sbjct: 1479 EQITKEQFEQLKSEKERTEKELADSKNELEHLQSEAVDADGKTEISNLE 1527


>SPBPJ4664.03 |mfm3||M-factor precursor Mfm3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 41

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 208 DWYLRTIKVSIFHHGNMPSQSIDSPVKN 291
           D    T+  S+ + GN PS++++  VKN
Sbjct: 2   DSMANTVSSSVVNTGNKPSETLNKTVKN 29


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 288 ELKFLKPAEDVFHYFVHVCFKYFNLVR 368
           +  FLKP   ++ YF+ +  +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,785
Number of Sequences: 5004
Number of extensions: 50547
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)