Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0250.Seq
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436...    41   8e-04
01_05_0176 - 18957676-18958067,18958139-18958242,18958358-189584...    29   3.5  
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534...    29   4.7  

>11_06_0628 -
           25643006-25643123,25643314-25643471,25643559-25643687,
           25644378-25644451,25644771-25644798
          Length = 168

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 23/48 (47%), Positives = 30/48 (62%)
 Frame = -1

Query: 395 LVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGML 252
           L AKL+    ++ E FK N+    K +LG+ K+LQFF GESM  DG L
Sbjct: 98  LSAKLDA---EKQEEFKKNIEGATKYLLGKLKDLQFFVGESMHDDGGL 142


>01_05_0176 -
           18957676-18958067,18958139-18958242,18958358-18958483,
           18959495-18959628,18959757-18959894,18960835-18960964,
           18961316-18961357,18964741-18965024
          Length = 449

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = +3

Query: 171 ISLLLDHV*KTS*LVFAYHQSLYIPSWQHAITIHRLPSKE 290
           +S +L+   KT+  +F Y   LY+P++   + +HRLP+++
Sbjct: 343 LSFVLEPTPKTARRMF-YGSLLYLPAFMAGLLLHRLPNEQ 381


>09_04_0741 -
           19852339-19852497,19853185-19853246,19853352-19853415,
           19853561-19853614,19853744-19853890,19854460-19854564,
           19854651-19854794,19854987-19855093,19855613-19855712,
           19855804-19855833,19856492-19856608,19856705-19856828,
           19857143-19857189,19857272-19857400,19857777-19857852,
           19858446-19858543,19858630-19858671,19858811-19859044
          Length = 612

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 216 FAYHQSLYIPSWQHAITIHRLPSKELKFLKPAEDV 320
           F YH  +Y+ SW H      + SK++K + P  D+
Sbjct: 264 FLYHGRMYVSSW-HICFHSNVFSKQIKVMLPLRDI 297


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,467,918
Number of Sequences: 37544
Number of extensions: 266294
Number of successful extensions: 528
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)