Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0250.Seq
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-10|CAB02099.1|  181|Caenorhabditis elegans Hypothetical p...    38   0.005
Z81549-2|CAB04473.1|  167|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z93383-6|CAB07623.1|  283|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF101316-3|AAC69232.2|  508|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z79754-10|CAB02099.1|  181|Caenorhabditis elegans Hypothetical
           protein F25H2.11 protein.
          Length = 181

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 15/28 (53%), Positives = 21/28 (75%)
 Frame = -3

Query: 255 VAMMEYRDFDGTQIPIMMFFKHGLEEEK 172
           VA++EYRD DGT++P +M  K  + EEK
Sbjct: 153 VAIIEYRDVDGTEVPTLMLVKEAIIEEK 180


>Z81549-2|CAB04473.1|  167|Caenorhabditis elegans Hypothetical
           protein F55C9.3 protein.
          Length = 167

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +1

Query: 193 FEKHHDWYLRTIKVSIFHHGNMPSQSIDSPVKN*SSLNLPRMSFITLFMFVLNT 354
           F + ++  LR  K+ +FH  N       SPV+    LN  + SF+T F    NT
Sbjct: 93  FRRRYNVELRHPKLRLFHFTN--ETQAKSPVETPFFLNHKKSSFLTFFNCFFNT 144


>Z93383-6|CAB07623.1|  283|Caenorhabditis elegans Hypothetical
           protein F54B8.6 protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 4/33 (12%)
 Frame = -3

Query: 471 ITIYWCQYFLIVFLQL----NDVIFLLFQISSK 385
           ++I++C++F+ VFL L    N   FLL  IS++
Sbjct: 42  LSIFYCRFFIDVFLTLSVSINKTYFLLISISNE 74


>AF101316-3|AAC69232.2|  508|Caenorhabditis elegans Hypothetical
           protein F52F10.2 protein.
          Length = 508

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 330 FVHVCFKYFNLVRRLLFQFCY 392
           F+++C +Y    RR L  FCY
Sbjct: 137 FIYLCIEYLPTGRRYLMMFCY 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,352,106
Number of Sequences: 27780
Number of extensions: 273632
Number of successful extensions: 574
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)