Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0250.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05540.1 68416.m00607 translationally controlled tumor family...    33   0.14 
At3g16640.1 68416.m02127 translationally controlled tumor family...    31   0.56 
At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR...    29   3.9  
At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)...    27   9.0  

>At3g05540.1 68416.m00607 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 156

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -1

Query: 398 RLVAKLEEKAPDQ-VEVFKTNMNKVMKDILGRFKELQFFTGESMD 267
           R + +L  K   +  E+FK ++    K ++ + K+ QFF GESM+
Sbjct: 80  RYIKQLSPKLDSENQELFKKHIESATKFLMSKLKDFQFFVGESME 124


>At3g16640.1 68416.m02127 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 168

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = -1

Query: 395 LVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGML 252
           L  KL E+  DQ  VFK  +    K +L R  + QFF GE M  D  L
Sbjct: 98  LTPKLSEE--DQA-VFKKGIEGATKFLLPRLSDFQFFVGEGMHDDSTL 142


>At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1355

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 386 KLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ-FFTGESMD 267
           KL    P  +EVFK+N N + ++    F ++  FF GE  D
Sbjct: 234 KLNHPPPQIMEVFKSNYNALNENEKSMFLDIACFFRGEKAD 274


>At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)
           family protein similar to SP|P41972 Isoleucyl-tRNA
           synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase)
           (IleRS) {Staphylococcus aureus}; contains Pfam profile
           PF00133: tRNA synthetases class I (I, L, M and V)
          Length = 1093

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = -1

Query: 338 MNKVMKDILGRFKELQFFTGE---SMDCDGM 255
           +NK++KDI+ R+K LQ +  +     DC G+
Sbjct: 167 LNKILKDIINRYKLLQNYKVQYVPGWDCHGL 197


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,183,702
Number of Sequences: 28952
Number of extensions: 239920
Number of successful extensions: 494
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)