Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0249.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr...    25   6.3  
SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ...    25   8.4  

>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +3

Query: 225 LARPHRRASHVTKCELNAQQTLLATHALWIVGQIVFL---VSFLIITTVTFLLAF 380
           +  P    S     ELN  + L  TH  +++G I+ L   + F++I  +  +  F
Sbjct: 93  IEHPPNLESSTILAELNRSKQLQKTHTNYLIGNIIGLPLTIPFILIPLIPNIPGF 147


>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 364 VTVVMMRKLTRNTIWPTIHSAWVAR 290
           +T +   K   N  W T+ SAW+ R
Sbjct: 1   MTAICTDKTELNASWNTVSSAWLTR 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,374,883
Number of Sequences: 5004
Number of extensions: 18477
Number of successful extensions: 41
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)