Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0249.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0468 + 14376926-14377183,14377534-14377710,14377802-143778...    29   1.6  
11_01_0732 + 6065852-6066531,6067066-6067141,6067231-6067357,606...    29   2.1  
12_02_0143 - 14354323-14354463,14354733-14354837,14355515-143558...    28   4.8  
04_04_0347 + 24564589-24565296                                         25   6.0  
04_04_0254 - 23951495-23951902,23952000-23952155,23952344-239524...    27   8.4  

>05_03_0468 +
           14376926-14377183,14377534-14377710,14377802-14377867,
           14378009-14378134,14378499-14378678,14379015-14379179,
           14380185-14380538
          Length = 441

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 317 RPDRIPRQFPHHHHGHLPSCVPT 385
           +P + P    HHHH H PS  P+
Sbjct: 8   QPPQTPPSLDHHHHHHTPSVGPS 30


>11_01_0732 +
           6065852-6066531,6067066-6067141,6067231-6067357,
           6068084-6068289
          Length = 362

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 287 ASGDPRAVDSRPDRIPRQFPHHHHGH 364
           A+  P A D  P   P+  PHH HGH
Sbjct: 23  AAAGPYAGDHGPIARPQGAPHHRHGH 48


>12_02_0143 -
           14354323-14354463,14354733-14354837,14355515-14355815,
           14356065-14356261,14356412-14356940,14357842-14358848
          Length = 759

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 198 VRDPGPVRGLARPHRRASHVTKCELNA 278
           VR  GP RGLA P R+ S  +  E+ A
Sbjct: 547 VRPVGPTRGLAEPDRQQSDASLFEVTA 573


>04_04_0347 + 24564589-24565296
          Length = 235

 Score = 24.6 bits (51), Expect(2) = 6.0
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2

Query: 299 PRAVDSRPDRIPRQFPHHHHGH 364
           P     R D+      HHHHGH
Sbjct: 80  PAPAPVRDDKPSPSHHHHHHGH 101



 Score = 21.4 bits (43), Expect(2) = 6.0
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +2

Query: 347 HHHHGHLPSCVP 382
           HHHH H  +  P
Sbjct: 101 HHHHRHATATAP 112


>04_04_0254 -
           23951495-23951902,23952000-23952155,23952344-23952485,
           23952772-23953160,23953833-23953948,23954290-23954371
          Length = 430

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 335 RQFPHHHHGHLPS 373
           R  P HHHGHL S
Sbjct: 312 RHIPEHHHGHLKS 324


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,555,807
Number of Sequences: 37544
Number of extensions: 144974
Number of successful extensions: 541
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)