Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0249.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49088| Best HMM Match : 2_5_RNA_ligase (HMM E-Value=3.1)            29   2.8  
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)             28   3.7  
SB_25818| Best HMM Match : Pkinase (HMM E-Value=1.7e-20)               27   6.5  
SB_52489| Best HMM Match : DUF1418 (HMM E-Value=3.9)                   27   8.6  

>SB_49088| Best HMM Match : 2_5_RNA_ligase (HMM E-Value=3.1)
          Length = 410

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 311 DSRPDRIPRQFPHHHHGHLPSCVP 382
           D  PD+IP Q P   H H+P  +P
Sbjct: 358 DQIPDQIPDQIPDQIHCHIPYQIP 381


>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
          Length = 772

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -1

Query: 388 SCWNARRKVTVVMMRK-LTRNTIWPTIHSAWVARSVCWAL 272
           S W  R    VV   K + RN+ W   HS WV R+  W +
Sbjct: 433 SKWVDRNSRWVVRNSKWVVRNSKWVVRHSKWVVRNSKWVV 472


>SB_25818| Best HMM Match : Pkinase (HMM E-Value=1.7e-20)
          Length = 956

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 324 IVF-LVSFLIITTVTFLLAFQHEPGFSLAQVFTL 422
           +VF L+ FL +  + F LAF    GFSL+  F L
Sbjct: 68  LVFGLLIFLNVCALLFTLAFNRAVGFSLSNSFVL 101


>SB_52489| Best HMM Match : DUF1418 (HMM E-Value=3.9)
          Length = 197

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 342 FLIITTVTFLLAFQHEPGFSLAQVFTLTCL--PQXXLRSGALARCVK 476
           FL++ +      F + PGF L+ +   TCL  PQ  +  G   R +K
Sbjct: 137 FLLLESHELARRFYNAPGFLLSALVLRTCLMPPQGNVEMGLRKRFIK 183


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,851,282
Number of Sequences: 59808
Number of extensions: 162572
Number of successful extensions: 477
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)