Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0249.Seq
         (499 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL355338-1|CAH70366.2|  663|Homo sapiens Zic family member 5 (od...    29   9.0  
AF378304-1|AAK55418.1|  639|Homo sapiens zinc family member 5 pr...    29   9.0  

>AL355338-1|CAH70366.2|  663|Homo sapiens Zic family member 5
           (odd-paired homolog, Drosophila) protein.
          Length = 663

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 320 PDRIPRQFPHHHHGHLPSCVPT*TRF 397
           P   P Q PH HH HLP       R+
Sbjct: 362 PPPAPAQHPHQHHPHLPGAAGAFLRY 387


>AF378304-1|AAK55418.1|  639|Homo sapiens zinc family member 5
           protein protein.
          Length = 639

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 320 PDRIPRQFPHHHHGHLPSCVPT*TRF 397
           P   P Q PH HH HLP       R+
Sbjct: 338 PPPAPAQHPHQHHPHLPGAAGAFLRY 363


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,669,062
Number of Sequences: 237096
Number of extensions: 826654
Number of successful extensions: 6103
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6068
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)