Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0249.Seq
         (499 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119578-1|AAM50232.1|  490|Drosophila melanogaster LD07162p pro...    44   9e-05
AE014134-2563|AAN10889.1|  490|Drosophila melanogaster CG4170-PD...    44   9e-05
AE014134-2562|AAN10888.1|  490|Drosophila melanogaster CG4170-PC...    44   9e-05
AE014134-2561|AAN10887.1|  490|Drosophila melanogaster CG4170-PB...    44   9e-05
AE014134-2560|AAF53437.1|  490|Drosophila melanogaster CG4170-PA...    44   9e-05
BT012327-1|AAS77452.1|  329|Drosophila melanogaster AT20787p pro...    33   0.28 
AY052117-1|AAK93541.1|  412|Drosophila melanogaster SD06613p pro...    33   0.28 
AE014297-3726|AAN14041.1|  412|Drosophila melanogaster CG11844-P...    33   0.28 
AE014297-3725|AAN14040.1|  412|Drosophila melanogaster CG11844-P...    33   0.28 
AE014297-3724|AAF56404.2|  443|Drosophila melanogaster CG11844-P...    33   0.28 
AE014296-3109|AAF49186.2|  246|Drosophila melanogaster CG14082-P...    29   3.5  
AY094735-1|AAM11088.1| 1171|Drosophila melanogaster GH27027p pro...    28   6.1  
AE014296-2131|AAS65014.1| 1171|Drosophila melanogaster CG4357-PB...    28   6.1  
AE014296-2130|AAF49927.1| 1171|Drosophila melanogaster CG4357-PA...    28   6.1  
BT010077-1|AAQ22546.1|  924|Drosophila melanogaster LD09801p pro...    24   6.9  
AE013599-1997|AAM68542.1|  924|Drosophila melanogaster CG12424-P...    24   6.9  
AE013599-1996|AAM68541.1|  924|Drosophila melanogaster CG12424-P...    24   6.9  
AE013599-1995|AAF58176.1|  924|Drosophila melanogaster CG12424-P...    24   6.9  

>AY119578-1|AAM50232.1|  490|Drosophila melanogaster LD07162p
           protein.
          Length = 490

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 28/70 (40%), Positives = 35/70 (50%)
 Frame = -3

Query: 458 RTAPQXXLRKAGEGEDLSQ*KTWFMLXXXXXXXXXXXXXXXXXXXXXXYPQRVGRQKRLL 279
           R  P   +RKAGEGED +Q K   M+                      YPQRVGRQ+R+L
Sbjct: 307 RIKPTFNIRKAGEGEDTTQWKK--MVVLTSNKKKENDSEEELEYDPALYPQRVGRQQRVL 364

Query: 278 GIEFTFSDVR 249
            I+F F+D R
Sbjct: 365 DIQFNFNDGR 374


>AE014134-2563|AAN10889.1|  490|Drosophila melanogaster CG4170-PD,
           isoform D protein.
          Length = 490

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 28/70 (40%), Positives = 35/70 (50%)
 Frame = -3

Query: 458 RTAPQXXLRKAGEGEDLSQ*KTWFMLXXXXXXXXXXXXXXXXXXXXXXYPQRVGRQKRLL 279
           R  P   +RKAGEGED +Q K   M+                      YPQRVGRQ+R+L
Sbjct: 307 RIKPTFNIRKAGEGEDTTQWKK--MVVLTSNKKKENDSEEELEYDPALYPQRVGRQQRVL 364

Query: 278 GIEFTFSDVR 249
            I+F F+D R
Sbjct: 365 DIQFNFNDGR 374


>AE014134-2562|AAN10888.1|  490|Drosophila melanogaster CG4170-PC,
           isoform C protein.
          Length = 490

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 28/70 (40%), Positives = 35/70 (50%)
 Frame = -3

Query: 458 RTAPQXXLRKAGEGEDLSQ*KTWFMLXXXXXXXXXXXXXXXXXXXXXXYPQRVGRQKRLL 279
           R  P   +RKAGEGED +Q K   M+                      YPQRVGRQ+R+L
Sbjct: 307 RIKPTFNIRKAGEGEDTTQWKK--MVVLTSNKKKENDSEEELEYDPALYPQRVGRQQRVL 364

Query: 278 GIEFTFSDVR 249
            I+F F+D R
Sbjct: 365 DIQFNFNDGR 374


>AE014134-2561|AAN10887.1|  490|Drosophila melanogaster CG4170-PB,
           isoform B protein.
          Length = 490

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 28/70 (40%), Positives = 35/70 (50%)
 Frame = -3

Query: 458 RTAPQXXLRKAGEGEDLSQ*KTWFMLXXXXXXXXXXXXXXXXXXXXXXYPQRVGRQKRLL 279
           R  P   +RKAGEGED +Q K   M+                      YPQRVGRQ+R+L
Sbjct: 307 RIKPTFNIRKAGEGEDTTQWKK--MVVLTSNKKKENDSEEELEYDPALYPQRVGRQQRVL 364

Query: 278 GIEFTFSDVR 249
            I+F F+D R
Sbjct: 365 DIQFNFNDGR 374


>AE014134-2560|AAF53437.1|  490|Drosophila melanogaster CG4170-PA,
           isoform A protein.
          Length = 490

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 28/70 (40%), Positives = 35/70 (50%)
 Frame = -3

Query: 458 RTAPQXXLRKAGEGEDLSQ*KTWFMLXXXXXXXXXXXXXXXXXXXXXXYPQRVGRQKRLL 279
           R  P   +RKAGEGED +Q K   M+                      YPQRVGRQ+R+L
Sbjct: 307 RIKPTFNIRKAGEGEDTTQWKK--MVVLTSNKKKENDSEEELEYDPALYPQRVGRQQRVL 364

Query: 278 GIEFTFSDVR 249
            I+F F+D R
Sbjct: 365 DIQFNFNDGR 374


>BT012327-1|AAS77452.1|  329|Drosophila melanogaster AT20787p
           protein.
          Length = 329

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -3

Query: 458 RTAPQXXLRKAGEGE-DLSQ*KTWFMLXXXXXXXXXXXXXXXXXXXXXXYPQRVGRQKRL 282
           R  P   LRKAGEG  D ++ K   +L                       PQRVGR +R+
Sbjct: 147 RAKPNYNLRKAGEGAADNAEWKKMIVLSKKKESNSEDELEYDPSLY----PQRVGRLQRI 202

Query: 281 LGIEFTFSDVR 249
           + I+F F+D R
Sbjct: 203 VDIQFNFNDGR 213


>AY052117-1|AAK93541.1|  412|Drosophila melanogaster SD06613p
           protein.
          Length = 412

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -3

Query: 458 RTAPQXXLRKAGEGE-DLSQ*KTWFMLXXXXXXXXXXXXXXXXXXXXXXYPQRVGRQKRL 282
           R  P   LRKAGEG  D ++ K   +L                       PQRVGR +R+
Sbjct: 230 RAKPNYNLRKAGEGAADNAEWKKMIVLSKKKESNSEDELEYDPSLY----PQRVGRLQRI 285

Query: 281 LGIEFTFSDVR 249
           + I+F F+D R
Sbjct: 286 VDIQFNFNDGR 296


>AE014297-3726|AAN14041.1|  412|Drosophila melanogaster CG11844-PC,
           isoform C protein.
          Length = 412

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -3

Query: 458 RTAPQXXLRKAGEGE-DLSQ*KTWFMLXXXXXXXXXXXXXXXXXXXXXXYPQRVGRQKRL 282
           R  P   LRKAGEG  D ++ K   +L                       PQRVGR +R+
Sbjct: 230 RAKPNYNLRKAGEGAADNAEWKKMIVLSKKKESNSEDELEYDPSLY----PQRVGRLQRI 285

Query: 281 LGIEFTFSDVR 249
           + I+F F+D R
Sbjct: 286 VDIQFNFNDGR 296


>AE014297-3725|AAN14040.1|  412|Drosophila melanogaster CG11844-PA,
           isoform A protein.
          Length = 412

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -3

Query: 458 RTAPQXXLRKAGEGE-DLSQ*KTWFMLXXXXXXXXXXXXXXXXXXXXXXYPQRVGRQKRL 282
           R  P   LRKAGEG  D ++ K   +L                       PQRVGR +R+
Sbjct: 230 RAKPNYNLRKAGEGAADNAEWKKMIVLSKKKESNSEDELEYDPSLY----PQRVGRLQRI 285

Query: 281 LGIEFTFSDVR 249
           + I+F F+D R
Sbjct: 286 VDIQFNFNDGR 296


>AE014297-3724|AAF56404.2|  443|Drosophila melanogaster CG11844-PB,
           isoform B protein.
          Length = 443

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -3

Query: 458 RTAPQXXLRKAGEGE-DLSQ*KTWFMLXXXXXXXXXXXXXXXXXXXXXXYPQRVGRQKRL 282
           R  P   LRKAGEG  D ++ K   +L                       PQRVGR +R+
Sbjct: 261 RAKPNYNLRKAGEGAADNAEWKKMIVLSKKKESNSEDELEYDPSLY----PQRVGRLQRI 316

Query: 281 LGIEFTFSDVR 249
           + I+F F+D R
Sbjct: 317 VDIQFNFNDGR 327


>AE014296-3109|AAF49186.2|  246|Drosophila melanogaster CG14082-PA
           protein.
          Length = 246

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 207 PGPVRGLARPHRR-ASHVTKCELNAQQTLLATHALWIVGQIVFLVSFLIITTV 362
           P   RGLA   RR A+H +   LN  ++ L T A  +   ++  +SF++   V
Sbjct: 188 PALARGLATKRRRSATHTSSRPLNPHESGLNTCAKVVTAVVLVALSFMVFLIV 240


>AY094735-1|AAM11088.1| 1171|Drosophila melanogaster GH27027p
           protein.
          Length = 1171

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 255 VTKCELNAQQTLLATHALWIVGQIVFLVSFLIITTVT 365
           + +C LN    +L     W+VGQ   +  F++I T T
Sbjct: 219 LVRCLLNIWGVMLFLRLSWVVGQAGVIEGFVLILTTT 255


>AE014296-2131|AAS65014.1| 1171|Drosophila melanogaster CG4357-PB,
           isoform B protein.
          Length = 1171

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 255 VTKCELNAQQTLLATHALWIVGQIVFLVSFLIITTVT 365
           + +C LN    +L     W+VGQ   +  F++I T T
Sbjct: 219 LVRCLLNIWGVMLFLRLSWVVGQAGVIEGFVLILTTT 255


>AE014296-2130|AAF49927.1| 1171|Drosophila melanogaster CG4357-PA,
           isoform A protein.
          Length = 1171

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 255 VTKCELNAQQTLLATHALWIVGQIVFLVSFLIITTVT 365
           + +C LN    +L     W+VGQ   +  F++I T T
Sbjct: 219 LVRCLLNIWGVMLFLRLSWVVGQAGVIEGFVLILTTT 255


>BT010077-1|AAQ22546.1|  924|Drosophila melanogaster LD09801p
           protein.
          Length = 924

 Score = 23.8 bits (49), Expect(2) = 6.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 332 PRQFPHHHHGH 364
           P+Q  HHHH H
Sbjct: 36  PQQLHHHHHQH 46



 Score = 22.6 bits (46), Expect(2) = 6.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 338 QFPHHHHGHLPSCVP 382
           Q P+HHH H    +P
Sbjct: 45  QHPNHHHPHHQPSIP 59


>AE013599-1997|AAM68542.1|  924|Drosophila melanogaster CG12424-PC,
           isoform C protein.
          Length = 924

 Score = 23.8 bits (49), Expect(2) = 6.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 332 PRQFPHHHHGH 364
           P+Q  HHHH H
Sbjct: 36  PQQLHHHHHQH 46



 Score = 22.6 bits (46), Expect(2) = 6.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 338 QFPHHHHGHLPSCVP 382
           Q P+HHH H    +P
Sbjct: 45  QHPNHHHPHHQPSIP 59


>AE013599-1996|AAM68541.1|  924|Drosophila melanogaster CG12424-PB,
           isoform B protein.
          Length = 924

 Score = 23.8 bits (49), Expect(2) = 6.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 332 PRQFPHHHHGH 364
           P+Q  HHHH H
Sbjct: 36  PQQLHHHHHQH 46



 Score = 22.6 bits (46), Expect(2) = 6.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 338 QFPHHHHGHLPSCVP 382
           Q P+HHH H    +P
Sbjct: 45  QHPNHHHPHHQPSIP 59


>AE013599-1995|AAF58176.1|  924|Drosophila melanogaster CG12424-PA,
           isoform A protein.
          Length = 924

 Score = 23.8 bits (49), Expect(2) = 6.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 332 PRQFPHHHHGH 364
           P+Q  HHHH H
Sbjct: 36  PQQLHHHHHQH 46



 Score = 22.6 bits (46), Expect(2) = 6.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 338 QFPHHHHGHLPSCVP 382
           Q P+HHH H    +P
Sbjct: 45  QHPNHHHPHHQPSIP 59


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,470,009
Number of Sequences: 53049
Number of extensions: 235511
Number of successful extensions: 2068
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2051
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1763278080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)