Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0249.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical pr...    31   0.61 
U64844-8|AAB18308.1|  330|Caenorhabditis elegans Serpentine rece...    30   0.81 
Z81540-5|CAB04405.2|  946|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z48783-4|CAA88698.1|  359|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AC025716-10|AAK39607.1|  474|Caenorhabditis elegans Hypothetical...    28   4.3  
AL021480-3|CAA16328.1|  410|Caenorhabditis elegans Hypothetical ...    27   10.0 

>Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical
           protein K02E2.2 protein.
          Length = 1021

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 75  THCESS*ERGNPCCRRPSAASRGDAV 152
           THCE     GN CC  P A++  DA+
Sbjct: 253 THCEKERRDGNKCCSGPLASTMRDAM 278


>U64844-8|AAB18308.1|  330|Caenorhabditis elegans Serpentine
           receptor, class h protein213 protein.
          Length = 330

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 288 LLATHALWIVGQIVFLVSFLIITTVTFLLAFQHEPGFSLAQVFTLTCLP 434
           L+ T   W V +  + ++  I+ TV F  A+Q  P   LA+ F ++  P
Sbjct: 126 LIPTSKCWRVFRTPWFITHFIVATVFFFPAYQMIPDQQLAKNFVISIAP 174


>Z81540-5|CAB04405.2|  946|Caenorhabditis elegans Hypothetical
           protein F46B3.5 protein.
          Length = 946

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 75  THCESS*ERGNPCCRRPSAASRGDAV 152
           THCES    GN CC    AA+  DA+
Sbjct: 269 THCESGKRDGNKCCDARLAATMRDAM 294


>Z48783-4|CAA88698.1|  359|Caenorhabditis elegans Hypothetical
           protein F33H1.3 protein.
          Length = 359

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 293 GDPRAVDSRPDRIPRQFPHHHHGHLP 370
           G P + +S P R+P    HHHH H P
Sbjct: 233 GPPSSYNSMPTRMP----HHHHHHHP 254


>AC025716-10|AAK39607.1|  474|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.7 protein.
          Length = 474

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 275 CPTNASGDPRAVDSRPDRIPRQFPHHHHGHLPSCVPT 385
           CP  +S         P +I   F H  H   PSC+PT
Sbjct: 91  CPKPSSESAFPFPISPTQIDLPFGHTAHDRKPSCLPT 127


>AL021480-3|CAA16328.1|  410|Caenorhabditis elegans Hypothetical
           protein Y39E4A.2b protein.
          Length = 410

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = +2

Query: 278 PTNASGDPRAVDSRPDRIPRQ-FPHHHHGH 364
           P N   D ++V S    +      HHHHGH
Sbjct: 26  PANIEEDTQSVSSSDSGVSADSIDHHHHGH 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,784,343
Number of Sequences: 27780
Number of extensions: 114410
Number of successful extensions: 406
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)