Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0249.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   3.1  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           21   9.4  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           21   9.4  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +2

Query: 344 PHHHHGH 364
           PHHHH H
Sbjct: 430 PHHHHSH 436



 Score = 21.4 bits (43), Expect = 5.4
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = +2

Query: 278 PTNASGDPRAVDSRPDRIPRQFPHHHHGHLP 370
           P +    P A  S P  I      HHH H P
Sbjct: 440 PHHQHSTPLAHSSYPAAIQIGHTPHHHPHPP 470


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +2

Query: 344 PHHHHGH 364
           PHHHH H
Sbjct: 350 PHHHHHH 356


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 348 IITTVTFLLAFQHEPGFSLAQVFTL 422
           +IT +  ++ F H+PG   A +  L
Sbjct: 89  VITALNNVIDFLHDPGLMEASLIGL 113


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 348 IITTVTFLLAFQHEPGFSLAQVFTL 422
           +IT +  ++ F H+PG   A +  L
Sbjct: 89  VITALNNVIDFLHDPGLMEASLIGL 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,297
Number of Sequences: 438
Number of extensions: 1403
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)