Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0249.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05930.1 68418.m00656 guanylyl cyclase-related (GC1) similar ...    31   0.43 
At5g05930.2 68418.m00655 guanylyl cyclase-related (GC1) similar ...    31   0.57 
At5g58630.1 68418.m07347 expressed protein                             27   7.0  
At3g48150.1 68416.m05251 cell division cycle family protein / CD...    27   7.0  
At2g45050.1 68415.m05608 zinc finger (GATA type) family protein ...    27   7.0  

>At5g05930.1 68418.m00656 guanylyl cyclase-related (GC1) similar to
           guanylyl cyclase (GC1) GI:21436486 from [Arabidopsis
           thaliana]; identical to cDNA  putative guanylate cyclase
           GI:21436486
          Length = 274

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
 Frame = +3

Query: 243 RASHVTKCELNAQQTLLATHALWIVGQIVFLVSFLIITTVTFLLAFQHEPGFSLAQVFTL 422
           RAS +  C L     + +T+++W V  + +L+    +    + + F   P +S+ + F  
Sbjct: 80  RASGIASCTLEDLAEICSTNSIWTV-DLAYLLQKFCVEFSYYTITFGANPNYSIEE-FYK 137

Query: 423 TCLPQXXLR----------SGALARCVKPXIHRVS 497
             LP+  +R          SG + +C    IH +S
Sbjct: 138 EQLPEDLVRVDLLFRKAHESGIIIQCRSVSIHEIS 172


>At5g05930.2 68418.m00655 guanylyl cyclase-related (GC1) similar to
           guanylyl cyclase (GC1) GI:21436486 from [Arabidopsis
           thaliana]; identical to cDNA  putative guanylate cyclase
           GI:21436486
          Length = 210

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
 Frame = +3

Query: 231 RPHRRASHVTKCELNAQQTLLATHALWIVGQIVFLVSFLIITTVTFLLAFQHEPGFSLAQ 410
           RP   AS +  C L     + +T+++W V  + +L+    +    + + F   P +S+ +
Sbjct: 12  RPTWIASGIASCTLEDLAEICSTNSIWTV-DLAYLLQKFCVEFSYYTITFGANPNYSIEE 70

Query: 411 VFTLTCLPQXXLR----------SGALARCVKPXIHRVS 497
            F    LP+  +R          SG + +C    IH +S
Sbjct: 71  -FYKEQLPEDLVRVDLLFRKAHESGIIIQCRSVSIHEIS 108


>At5g58630.1 68418.m07347 expressed protein 
          Length = 372

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
 Frame = -1

Query: 373 RRKVTVVMMRKLTRNTIWPTIHSA-WVARSVCWALSSHLVTCEAR 242
           RRK      RK     +   I    WV  + CW+    LV CE R
Sbjct: 191 RRKEKRKSRRKRKETKLRQNIEKENWVQSNGCWSKEEDLVNCEVR 235


>At3g48150.1 68416.m05251 cell division cycle family protein / CDC
           family protein similar to cell division cycle protein 23
           [Homo sapiens] GI:3283051, anaphase-promoting complex
           subunit 8 [Homo sapiens] GI:6180017; contains Pfam
           profile PF00515: TPR Domain
          Length = 579

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +3

Query: 231 RPHRRASHVTKCELNAQQTLLATHALWIVGQ 323
           R +RRASH+ + +++ +   L  +AL++ G+
Sbjct: 106 REYRRASHMLRDQVSKKSLFLRYYALYLAGE 136


>At2g45050.1 68415.m05608 zinc finger (GATA type) family protein
           identical to cDNA GATA transcription factor 2 GI:2959731
          Length = 264

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 284 NASGDPRAVDSRPDRIPRQFPHHHHGHLPS 373
           ++SG   A  S     P Q P  HH HLPS
Sbjct: 29  SSSGGSTAATSSSSFPPPQNPSFHHHHLPS 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,389,959
Number of Sequences: 28952
Number of extensions: 105077
Number of successful extensions: 351
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)