Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0248.Seq
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   1.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.5  
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    22   2.7  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    22   2.7  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    22   2.7  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    21   8.1  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 16  VYYLGNTITFFFFPV 60
           V++LG+ + FF FP+
Sbjct: 236 VFFLGSILIFFIFPL 250


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 151 NLKHYKEYSKSCLVVLNTDILTEMVRNI--EYVFEAKHIFP 267
           N+K  K   + C + +N   L E  RN+  + +F  +  FP
Sbjct: 718 NMKLEKVPGECCAICVNATSLVESNRNVPQKCIFNGQAYFP 758


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 6/26 (23%), Positives = 17/26 (65%)
 Frame = -3

Query: 242 TYSIFLTISVRISVFNTTKHDLEYSL 165
           TYS+F+  ++ ++V+  T   +++ +
Sbjct: 251 TYSLFMMANITVAVYGFTSEIVDHGI 276


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 6/26 (23%), Positives = 17/26 (65%)
 Frame = -3

Query: 242 TYSIFLTISVRISVFNTTKHDLEYSL 165
           TYS+F+  ++ ++V+  T   +++ +
Sbjct: 251 TYSLFMMANITVAVYGFTSEIVDHGI 276


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 6/26 (23%), Positives = 17/26 (65%)
 Frame = -3

Query: 242 TYSIFLTISVRISVFNTTKHDLEYSL 165
           TYS+F+  ++ ++V+  T   +++ +
Sbjct: 251 TYSLFMMANITVAVYGFTSEIVDHGI 276


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 495 SGHKKRYRTVI 463
           SGHKKR R V+
Sbjct: 36  SGHKKRKRRVL 46


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,743
Number of Sequences: 336
Number of extensions: 2254
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)