Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0248.Seq
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 28 0.68
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 26 2.7
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 26 2.7
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 26 2.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 4.8
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 4.8
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch... 25 6.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 6.3
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 6.3
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 25 6.3
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 28.3 bits (60), Expect = 0.68
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -1
Query: 454 IXRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGV 308
+ AP PAAP+ P+A P Q ++P A+ V + PP+ V P V
Sbjct: 541 VPSAPQRPAAPVVPEA-PSVPQRPAVPVVPEALSVPQ--PPVAPVAPEV 586
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 26.2 bits (55), Expect = 2.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 460 QPIXRAPTVPAAPIPPQARPGQ 395
+P+ R P +P P+P + PG+
Sbjct: 101 EPLPREPPLPNEPVPEEPLPGE 122
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 26.2 bits (55), Expect = 2.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 208 YRCLIQLNTTWSIPCSV*DFKSYLMTSNDFNDNF 107
+RC T SIPC++ + ND+N NF
Sbjct: 85 FRCDCGTTRTHSIPCNLRKSVDECGSENDYNHNF 118
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 26.2 bits (55), Expect = 2.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 472 YSHPQPIXRAPTVPAAPIPPQARPGQA 392
+S+P + R P +PA P+ P RP A
Sbjct: 220 FSYPYELQRKPLIPAHPV-PSFRPTSA 245
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 4.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -1
Query: 463 PQPIXRAPTVPAAPIPPQARPGQAQP 386
P P+ + V P PP A PG++ P
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAP 401
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 4.8
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = -2
Query: 384 FRQFFYLGRFKYIGRFLHFV*CFQESSFRREQTFTQAWSRKNMLCFENIFDIPYHLRKNI 205
F +FF F Y+ + HFV + +F ++ + N LC E P+H +N+
Sbjct: 280 FVEFFRF--FGYLFDYEHFVLSIRHGTFLSKRAKGWQFQLNNFLCVEE----PFHTSRNL 333
>SPAC1006.02 |||WD repeat protein, human GNB1L
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 308 HHSGVNRLLHKPGQGKICFASKTYSIFL 225
H G+N L PG I ASK I L
Sbjct: 337 HSDGINSLAFHPGSNVIALASKDTRISL 364
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 6.3
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Frame = -1
Query: 463 PQPIXRAPTVPAAPIPPQARPGQAQPLQAVLL-PRAVQVHRTLPPL 329
P P P AP P + P AQP V P A + +PP+
Sbjct: 152 PSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPM 197
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.0 bits (52), Expect = 6.3
Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 12/59 (20%)
Frame = -1
Query: 469 SHP---QPIXRAPTVPAA------PIPPQARPGQAQP---LQAVLLPRAVQVHRTLPPL 329
+HP QPI AP VPA PIPPQA P P V LP A + P+
Sbjct: 230 NHPMAGQPIAIAP-VPAPNQAALPPIPPQALPANGTPNTLASPVTLPAANSAVQNAQPV 287
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 25.0 bits (52), Expect = 6.3
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +2
Query: 233 SNMFSKQSIFFLDQACVKVCSRLNDDSWKH---*TKWR 337
+N S Q I +LD+ K +LND KH TKW+
Sbjct: 550 NNATSIQQIQYLDEELGKTLKQLNDLKEKHAQLQTKWK 587
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,866,511
Number of Sequences: 5004
Number of extensions: 37271
Number of successful extensions: 104
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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