Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0248.Seq
(499 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.40
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 0.70
SB_52556| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.92
SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.92
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 30 1.2
SB_47282| Best HMM Match : RCSD (HMM E-Value=0.53) 29 2.8
SB_11994| Best HMM Match : ERM (HMM E-Value=0.28) 29 2.8
SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 28 3.7
SB_15801| Best HMM Match : eRF1_2 (HMM E-Value=4.8) 28 3.7
SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_43309| Best HMM Match : RBM1CTR (HMM E-Value=7.5) 28 4.9
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 28 4.9
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_39018| Best HMM Match : Crystallin (HMM E-Value=8.5) 27 6.5
SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_25720| Best HMM Match : Enterotoxin_HS (HMM E-Value=1.9) 24 7.2
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_6424| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_31316| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_26933| Best HMM Match : CXC (HMM E-Value=0.0082) 27 8.6
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_2616| Best HMM Match : Na_trans_assoc (HMM E-Value=2.6) 27 8.6
>SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 31.5 bits (68), Expect = 0.40
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -1
Query: 433 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVI 305
PA P +RP A P LP+ V R LP L VFPG++
Sbjct: 313 PATAPPSISRPATAPPPVFRGLPQLPPVFRCLPQLPPVFPGLL 355
>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1041
Score = 30.7 bits (66), Expect = 0.70
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -1
Query: 487 QKALPYSHPQPIXRAPTVPAAPIPPQARPGQAQPLQAVLLP 365
Q L Y+ P P AP P PP+ +QP QAV P
Sbjct: 481 QPQLIYTQPSPPASAPVTPQQYQPPRHAVPTSQPYQAVQRP 521
>SB_52556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 30.7 bits (66), Expect = 0.70
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Frame = -1
Query: 493 RSQKALPYSHPQPIXRAPT-----VPAAPIPPQARPGQAQPLQAVLLPRA 359
+ QKA P + P+P PT PA P PP A P P V P A
Sbjct: 206 KQQKATPVNPPEPDYLEPTPPPPAAPAPPPPPAAAPPPPPPPPPVKKPAA 255
>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2749
Score = 30.3 bits (65), Expect = 0.92
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = -1
Query: 472 YSHPQP-IXRAPTVPAAPIPPQARP--GQAQPLQAVLLPRAVQVHRTLPP 332
+S P P + T+P+ P+PP+A G++QP L P+A+++ PP
Sbjct: 995 HSPPSPDLVFDTTLPSTPLPPKALKVLGESQPSTQRLPPKALKLLGESPP 1044
>SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 30.3 bits (65), Expect = 0.92
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -1
Query: 301 QA*TDFYTSLVKEKYALLRKHIRYSLPSP*EYRCLIQLNTTWSIPCSV 158
Q+ +Y VKEK H+ + P RC I+LN WS PC V
Sbjct: 738 QSQKSYYDCWVKEKIFKKGDHVLWFDKKPRRGRC-IKLNRPWSGPCIV 784
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -1
Query: 445 APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 332
+P +P AP+ P P P +A+ P LPP
Sbjct: 217 SPHIPPAPLHPHIPPAPPNPSKAIATPNPPMPETPLPP 254
>SB_47282| Best HMM Match : RCSD (HMM E-Value=0.53)
Length = 264
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -1
Query: 499 RIRSQKALPYSHPQPIXRAPTVPAAPIPPQARPGQAQP 386
++ K++ + P P+ P P P PP PG +P
Sbjct: 61 KLEEAKSMAAATPPPLCAPPPPPPPPPPPPPPPGAKKP 98
>SB_11994| Best HMM Match : ERM (HMM E-Value=0.28)
Length = 465
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -1
Query: 499 RIRSQKALPYSHPQPIXRAPTVPAAPIPPQARPGQAQP 386
++ K++ + P P+ P P P PP PG +P
Sbjct: 262 KLEEAKSMAAATPPPLCAPPPPPPPPPPPPPPPGAKKP 299
>SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 519
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 475 PYSHPQPIXRAPTVPAAPIPPQARPGQAQP 386
P P P P+ P P+ P+ RP +QP
Sbjct: 51 PTPAPTPPPALPSTPTLPLAPRPRPTASQP 80
>SB_15801| Best HMM Match : eRF1_2 (HMM E-Value=4.8)
Length = 562
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 198 KHRYSYGDGKEYRICFRSKAYFSLTRLV 281
+H +S GD ++ IC SKAY L R V
Sbjct: 432 EHEFSLGDAEKEFICATSKAYEELIRNV 459
>SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 28.3 bits (60), Expect = 3.7
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = -1
Query: 433 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVIIQA*TDFYTSLVKEKYA 254
P PIP QA PGQA P + P VQ + + P FPG + ++ T
Sbjct: 5 PMKPIPGQALPGQAIP--GMQGPYQVQPPQGVSPGMPGFPGANVSLGSNMPTMPAGTTTV 62
Query: 253 LLRKHIRYSLP 221
++ +R +P
Sbjct: 63 NFQQQVRPQVP 73
>SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1271
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 475 PYSHPQPIXRAPTVPAAPIP 416
PY HP+P AP P AP P
Sbjct: 157 PYYHPKPADPAPMQPPAPPP 176
>SB_43309| Best HMM Match : RBM1CTR (HMM E-Value=7.5)
Length = 130
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -1
Query: 442 PTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 314
P+ A+ IPP RP ++P++ P + H +LP RL +P
Sbjct: 38 PSENASTIPPITRPLTSRPIRG-QHPPVRRAHDSLPSERLDYP 79
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 27.9 bits (59), Expect = 4.9
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -1
Query: 487 QKALPYSHPQPIXRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 332
Q P+ R TVP P+PP P Q+ P +L+P + LPP
Sbjct: 616 QATPPHLQSTAQPRPTTVP--PLPPTPPPRQSTPPPLLLIPLLPLLTLPLPP 665
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 27.9 bits (59), Expect = 4.9
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = -1
Query: 475 PYSHPQPIXRAPTVP--AAPIPPQARPG--QAQPLQAVLLPRAVQVHRTLPPLR 326
P + P P R P+ P A PIPP +P ++P P + +PP R
Sbjct: 1036 PSAQPLPPPRKPSPPPSAVPIPPPRKPSPPPSEPAPPPRQPPPPSTSQPVPPPR 1089
>SB_39018| Best HMM Match : Crystallin (HMM E-Value=8.5)
Length = 67
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 341 RPMYLNRPR*KNCLKW-LCLPRTCLRWNRCCWHCRCSXY 454
R Y+ + K L + +CL T LR +R C HC C +
Sbjct: 22 RQRYVTHDKRKALLSFTVCLCSTHLRSDRLCVHCPCRIF 60
>SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 475 PYSHPQPIXRAPTVPAAPIPPQARPGQAQPLQAV 374
P S P ++P A +PPQ+ PG + P Q++
Sbjct: 1048 PQSIPGASIPPQSIPGAFLPPQSIPGASLPPQSI 1081
>SB_25720| Best HMM Match : Enterotoxin_HS (HMM E-Value=1.9)
Length = 706
Score = 23.8 bits (49), Expect(2) = 7.2
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 332 WRKRPMYLNRPR*KNCLKWLCLPRTCLRWNRCC 430
W Y N + +C K C+ C WNRCC
Sbjct: 306 WSAEERYNNSCQLGHCKK-ACIG--CPDWNRCC 335
Score = 21.8 bits (44), Expect(2) = 7.2
Identities = 5/9 (55%), Positives = 7/9 (77%)
Frame = +2
Query: 407 CLRWNRCCW 433
C WN+CC+
Sbjct: 346 CPSWNKCCY 354
>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 493 RSQKALPYSHPQPIXRAP-TVPAAPIPPQARPGQAQPLQA 377
+ ++ P + +P + P VP + PQA PG P+ A
Sbjct: 106 KEKRKAPENAARPAKKVPIAVPVMGVIPQAMPGMVPPVMA 145
>SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 563
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = -1
Query: 493 RSQKALPYSHPQPIXRAPTVPAAPIPPQARPGQAQP 386
+ QKA S P AP PA P PP PG P
Sbjct: 383 KEQKAASTSMPVKKVPAPVSPAQPTPPS--PGPTSP 416
>SB_6424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = -1
Query: 424 PIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRL 323
P P RPGQAQ L L +HR+L PL L
Sbjct: 40 PGPMARRPGQAQTLGT--LVEDAHMHRSLRPLAL 71
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 493 RSQKALPYSHPQPIXRAPTVPAAPIPPQARPGQAQP 386
+S +LP S QP+ + P IP Q P QP
Sbjct: 2086 QSGPSLPMSAQQPVMQQPINQQVQIPQQGMPVNIQP 2121
>SB_31316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 383
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/65 (24%), Positives = 26/65 (40%)
Frame = -1
Query: 475 PYSHPQPIXRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVIIQA 296
PY + +P+ A T P P+ P P A+ + ++ PLR V+ +
Sbjct: 202 PYDYLRPLLGADTKPYPPVGPAILPTDCGYKYALTVVDVASRYKADCPLRTKSAAVVSRK 261
Query: 295 *TDFY 281
D Y
Sbjct: 262 LADIY 266
>SB_26933| Best HMM Match : CXC (HMM E-Value=0.0082)
Length = 842
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 198 KHRYSYGDGKEYRICFRSKAYFSLTRLV 281
+H +S GD + IC SKAY L R V
Sbjct: 7 EHEFSVGDAGKKFICATSKAYEELIRNV 34
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Frame = -1
Query: 463 PQPIXRAPTVPAAPIPPQARPGQAQPL---QAVLLPRAVQVHRTLPPLRLVFP 314
P +P+VP P PP +PG A + + + V+ + P RL P
Sbjct: 2311 PSTGSHSPSVPPPPPPPPEQPGDAMDIEDEEGQPSGSKILVNTPIAPTRLALP 2363
>SB_2616| Best HMM Match : Na_trans_assoc (HMM E-Value=2.6)
Length = 252
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 318 FQESSFRREQTFTQAWSRKNMLCFENIFDIPYHLRKNI 205
F S +++ + Q +K L NIF IP + RKN+
Sbjct: 180 FYSSLYKKSSSPLQDSFKKKFLLNPNIFKIPEYSRKNV 217
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,947,430
Number of Sequences: 59808
Number of extensions: 276389
Number of successful extensions: 827
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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