Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0248.Seq
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 31 0.61
Z75529-5|CAA99784.1| 610|Caenorhabditis elegans Hypothetical pr... 30 0.81
Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical pr... 30 0.81
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 30 0.81
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 29 2.5
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 29 2.5
U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical pr... 28 3.3
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 28 3.3
AF022971-13|AAG23979.1| 325|Caenorhabditis elegans Serpentine r... 28 3.3
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 28 4.3
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 28 4.3
AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical ... 28 4.3
AC006680-2|AAK72302.1| 309|Caenorhabditis elegans Serpentine re... 28 4.3
AC025716-21|AAT39978.1| 586|Caenorhabditis elegans Hypothetical... 27 5.7
AC025716-20|AAT39977.2| 946|Caenorhabditis elegans Hypothetical... 27 5.7
Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical p... 27 7.6
Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical p... 27 7.6
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p... 27 10.0
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 27 10.0
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical... 27 10.0
AF357877-1|AAK27715.1| 835|Caenorhabditis elegans receptor-medi... 27 10.0
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 27 10.0
AC006695-13|AAF39978.1| 786|Caenorhabditis elegans Receptor med... 27 10.0
AC006695-11|AAF39979.1| 835|Caenorhabditis elegans Receptor med... 27 10.0
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 30.7 bits (66), Expect = 0.61
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -1
Query: 487 QKALPYSHPQPIXR-APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLP 335
Q+ + + P+PI + AP V AP PP+ + QAQP+Q P V + P
Sbjct: 240 QQPVVQAPPKPIVQQAPVVQQAP-PPKQQQAQAQPVQQPPNPAPVVQQASAP 290
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -1
Query: 463 PQP-IXRAPTVPAAPIPPQARPGQAQPLQ 380
P+P + +APT AAP PP+ P QA P+Q
Sbjct: 311 PKPAVQQAPT-RAAPAPPKPAPQQAPPVQ 338
Score = 28.7 bits (61), Expect = 2.5
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Frame = -1
Query: 475 PYSHPQPIXRAPTVPAAPI-----PPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLV 320
P + P PTV API PP QAQ QA P A Q+ PP +V
Sbjct: 87 PVAQAPPAQAKPTVQQAPILVAQAPPNPPAPQAQQHQAPAPPAARQIPVQQPPKPVV 143
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1
Query: 445 APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 332
AP A PI Q +P Q Q QA + + V + PP
Sbjct: 42 APPAQAKPIVQQTQPAQKQQAQAPPAAQQIPVVQQAPP 79
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 466 HPQPIXRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQ 353
+P P+ + + P PP+ P Q P+Q AVQ
Sbjct: 279 NPAPVVQQASAPVQQAPPKPVPQQTPPVQQAPPKPAVQ 316
>Z75529-5|CAA99784.1| 610|Caenorhabditis elegans Hypothetical
protein C44H9.6 protein.
Length = 610
Score = 30.3 bits (65), Expect = 0.81
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Frame = +2
Query: 332 WRKRPMYLNRPR*KNCLKWLCLPRTCLRWNRCC----WHCRCS 448
W+KRP Y R R ++ K LP + + C W C C+
Sbjct: 567 WKKRPYYRRRQRKRSAQKEKSLPESFQAMGKSCAKMVWRCICN 609
>Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical
protein R07E3.6 protein.
Length = 927
Score = 30.3 bits (65), Expect = 0.81
Identities = 19/58 (32%), Positives = 23/58 (39%)
Frame = -1
Query: 496 IRSQKALPYSHPQPIXRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRL 323
+ + LPY P P +P AP PP R PL V + TLPP L
Sbjct: 729 VATNSKLPYFIPPPQGYVGPLPPAPPPPTFRVAPQVPLPVVQTTQTAP-KPTLPPTTL 785
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 30.3 bits (65), Expect = 0.81
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 475 PYSHPQPIXRAPTVPAAPIPPQARPGQAQPL 383
P +PQ AP P AP P A P A PL
Sbjct: 54 PAPYPQQAVPAPAPPPAPYPQHAVPAPAPPL 84
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/48 (37%), Positives = 19/48 (39%)
Frame = -1
Query: 475 PYSHPQPIXRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 332
P +PQ AP P AP P A P A P Q P H PP
Sbjct: 99 PAPYPQHAVPAPAPPPAPYPQHAVPAPA-PYQQQPPPPPPPPHYPPPP 145
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 469 SHPQPIXRAPTVPAAPIPPQARPGQAQP 386
S+PQ P P AP P A P A P
Sbjct: 86 SYPQNAVPVPAPPPAPYPQHAVPAPAPP 113
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -1
Query: 463 PQPIXRAPTVPAAPIPPQARPGQAQPLQAVLLP 365
P P VP +PPQ RP Q P+Q P
Sbjct: 348 PPPTLPPVQVPIQTLPPQTRPPQLPPVQITQPP 380
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -1
Query: 463 PQPIXRAPTVPAAPIPPQARPGQAQPLQAVLLP 365
P P VP +PPQ RP Q P+Q P
Sbjct: 445 PPPTLPPVQVPIQTLPPQTRPPQLPPVQITQPP 477
>U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical
protein C18H9.8 protein.
Length = 674
Score = 28.3 bits (60), Expect = 3.3
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -1
Query: 463 PQPIXRAPTVPAAPIPPQARP--GQAQPLQAVLLPRAVQVHRTLPPLRL 323
P P+ RA P AP RP G A+P A L P Q R PP R+
Sbjct: 126 PMPVSRAGGPPRAPTSMGGRPMTGMARPPTAGLRPVTQQGLRA-PPSRM 173
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -1
Query: 454 IXRAPTVP-AAPIPPQARPGQAQP 386
+ P++P P+PPQ PGQA P
Sbjct: 402 VGELPSLPDMGPLPPQTAPGQAAP 425
>AF022971-13|AAG23979.1| 325|Caenorhabditis elegans Serpentine
receptor, class h protein247 protein.
Length = 325
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 13 YVYYLGNTITFFFFPVQNRGFLCMLIKVKQR 105
++ + N ITFF PV G C+L K +R
Sbjct: 15 FLISISNVITFFEIPVCTFGAYCILFKTPER 45
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 27.9 bits (59), Expect = 4.3
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = -1
Query: 475 PYSHPQPIXRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 314
P P+P R P +PA+P PP RP ++P+ + L Q + L P V P
Sbjct: 92 PPPPPKPTIRPPPIPASP-PP--RPPASEPV-GIPLYSEKQHQQQLRPTTAVSP 141
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 27.9 bits (59), Expect = 4.3
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = -1
Query: 475 PYSHPQPIXRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 314
P P+P R P +PA+P PP RP ++P+ + L Q + L P V P
Sbjct: 314 PPPPPKPTIRPPPIPASP-PP--RPPASEPV-GIPLYSEKQHQQQLRPTTAVSP 363
>AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical
protein T08D2.8 protein.
Length = 388
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = -1
Query: 457 PIXRAPTVPAAPIPPQ---ARPGQ--AQPLQAVLLPRAVQVHRTLP 335
P +AP P AP+ P+ ARP +P AV RA Q+ + P
Sbjct: 267 PSPKAPVAPVAPVKPKPFVARPAPNFGKPRAAVAPARAPQITQRAP 312
>AC006680-2|AAK72302.1| 309|Caenorhabditis elegans Serpentine
receptor, class x protein9 protein.
Length = 309
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = -3
Query: 266 GKICFASKTYSIFLTISVRISVFNTTKHDLEYSL*CLRF*ILLND 132
G + F+S +SIF ++S+ ISVF + S+ + F +++D
Sbjct: 8 GVVLFSSSIFSIFSSVSIFISVFKLAFISRKSSIYVIAFFNIISD 52
>AC025716-21|AAT39978.1| 586|Caenorhabditis elegans Hypothetical
protein Y39G10AR.18b protein.
Length = 586
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = -1
Query: 475 PYSH-PQPIXRAPTVPAAPIPPQARPGQAQPLQA 377
P +H P P+ PT P P P A P QA A
Sbjct: 265 PLAHLPAPVAIYPTPPPPPAPAPAAPQQASAAPA 298
>AC025716-20|AAT39977.2| 946|Caenorhabditis elegans Hypothetical
protein Y39G10AR.18a protein.
Length = 946
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = -1
Query: 475 PYSH-PQPIXRAPTVPAAPIPPQARPGQAQPLQA 377
P +H P P+ PT P P P A P QA A
Sbjct: 625 PLAHLPAPVAIYPTPPPPPAPAPAAPQQASAAPA 658
>Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical
protein C49C3.4 protein.
Length = 1566
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -3
Query: 257 CFASKTYSIFLTISVRISV 201
C ++KTYS+FL ISV +++
Sbjct: 455 CDSTKTYSLFLNISVDLTI 473
>Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical
protein T11G6.5 protein.
Length = 1406
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -1
Query: 475 PYSHPQPIXRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 332
P+S PQP+ R P++ I P P + LP V V PP
Sbjct: 648 PFSSPQPVPRFNGPPSSFILPSIYPPPPPGVSLNQLPPRVPVPIIRPP 695
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = -1
Query: 469 SHPQPIXRAPTVPAAP---IPPQARPGQ 395
S+P P +P+ PA P +PP A+P Q
Sbjct: 381 SYPSPSYPSPSYPAEPAYSVPPPAKPEQ 408
>Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical
protein T06E4.12 protein.
Length = 228
Score = 27.1 bits (57), Expect = 7.6
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Frame = -1
Query: 475 PYSHPQPIXRAPTVPA-APIPPQA-RPGQAQPL------QAVLLPRAVQVHRTLPPLRLV 320
P P+P+ AP +PA AP P A RP A P ++ PR V +P
Sbjct: 141 PILAPRPVLAAPAIPAFAPAPLLAPRPVLAAPAIPAFAPAPIIAPRPVLAAPAIPAFAPA 200
Query: 319 FPGVI 305
P I
Sbjct: 201 VPAAI 205
>Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical
protein T11G6.5 protein.
Length = 1406
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -1
Query: 475 PYSHPQPIXRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 332
P+S PQP+ R P++ I P P + LP V V PP
Sbjct: 648 PFSSPQPVPRFNGPPSSFILPSIYPPPPPGVSLNQLPPRVPVPIIRPP 695
>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 26.6 bits (56), Expect = 10.0
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = +1
Query: 169 EYSKSCLVVLNTDILTEMVRNIEYVFEAKH 258
+Y + CL +LN++ +T+ + + +F H
Sbjct: 6 DYPQGCLPILNSNNVTQQIERLRKLFNCLH 35
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 26.6 bits (56), Expect = 10.0
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = -1
Query: 481 ALPYSHPQPIXRAPTVPAAPIPPQARPGQAQPLQA 377
A P S PQ +AP V AAP P QA P QA
Sbjct: 590 ARPPSTPQA-PQAPPVQAAPAPVQAPQAPQAPPQA 623
>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 26.6 bits (56), Expect = 10.0
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = +1
Query: 169 EYSKSCLVVLNTDILTEMVRNIEYVFEAKH 258
+Y + CL +LN++ +T+ + + +F H
Sbjct: 6 DYPQGCLPILNSNNVTQQIERLRKLFNCLH 35
>AF357877-1|AAK27715.1| 835|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform II protein.
Length = 835
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = -1
Query: 499 RIRSQKALPYSHPQPIXRAPTVPAAPIPPQARPGQAQPLQAV 374
++R+Q+ +P + +PI R A+ + P+A P A+ ++ V
Sbjct: 227 KMRAQQQVPVAADRPIRRLSIARASMMTPKASPKLAKYMEPV 268
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 26.6 bits (56), Expect = 10.0
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = -1
Query: 481 ALPYSHPQPIXRAPTVPAAPIPPQARPGQAQPLQA 377
A P S PQ +AP V AAP P QA P QA
Sbjct: 590 ARPPSTPQA-PQAPPVQAAPAPVQAPQAPQAPPQA 623
>AC006695-13|AAF39978.1| 786|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform a protein.
Length = 786
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = -1
Query: 499 RIRSQKALPYSHPQPIXRAPTVPAAPIPPQARPGQAQPLQAV 374
++R+Q+ +P + +PI R A+ + P+A P A+ ++ V
Sbjct: 178 KMRAQQQVPVAADRPIRRLSIARASMMTPKASPKLAKYMEPV 219
>AC006695-11|AAF39979.1| 835|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform b protein.
Length = 835
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = -1
Query: 499 RIRSQKALPYSHPQPIXRAPTVPAAPIPPQARPGQAQPLQAV 374
++R+Q+ +P + +PI R A+ + P+A P A+ ++ V
Sbjct: 227 KMRAQQQVPVAADRPIRRLSIARASMMTPKASPKLAKYMEPV 268
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,374,567
Number of Sequences: 27780
Number of extensions: 210063
Number of successful extensions: 731
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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