Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0248.Seq
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g21140.1 68415.m02508 hydroxyproline-rich glycoprotein family... 31 0.33
At4g00890.1 68417.m00120 proline-rich family protein contains pr... 29 1.3
At2g33790.1 68415.m04144 pollen Ole e 1 allergen and extensin fa... 29 1.3
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro... 29 1.7
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 29 1.7
At1g13050.1 68414.m01513 expressed protein 29 1.7
At5g65410.1 68418.m08226 zinc finger homeobox family protein / Z... 29 2.3
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 29 2.3
At1g75000.1 68414.m08707 GNS1/SUR4 membrane family protein conta... 29 2.3
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa... 29 2.3
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 29 2.3
At5g48360.1 68418.m05975 formin homology 2 domain-containing pro... 28 4.0
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 28 4.0
At5g61090.1 68418.m07665 proline-rich family protein contains pr... 27 7.0
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 27 7.0
At5g08520.1 68418.m01011 myb family transcription factor contain... 27 7.0
At4g11280.1 68417.m01824 1-aminocyclopropane-1-carboxylate synth... 27 7.0
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 27 7.0
At3g11000.1 68416.m01328 expressed protein 27 7.0
At3g10070.1 68416.m01207 transcription initiation factor IID (TF... 27 7.0
At2g35350.1 68415.m04334 protein phosphatase 2C family protein /... 27 7.0
At5g57625.1 68418.m07199 allergen V5/Tpx-1-related family protei... 27 9.3
At5g23150.1 68418.m02707 PWWP domain-containing protein identica... 27 9.3
At5g07150.1 68418.m00815 leucine-rich repeat family protein cont... 27 9.3
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME... 27 9.3
At5g04500.1 68418.m00449 glycosyltransferase family protein 47 l... 27 9.3
At1g13900.1 68414.m01631 calcineurin-like phosphoesterase family... 27 9.3
>At2g21140.1 68415.m02508 hydroxyproline-rich glycoprotein family
protein identical to proline-rich protein 2 [Arabidopsis
thaliana] gi|7620011|gb|AAF64549
Length = 321
Score = 31.5 bits (68), Expect = 0.33
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -1
Query: 472 YSHPQPIXRAPTV-PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 329
Y P PI + P V P P PP+ +P + P V +T PPL
Sbjct: 216 YKPPVPIYKPPVVIPKKPCPPKIHKPIYKPPVPIYKPPVVIPKKTFPPL 264
>At4g00890.1 68417.m00120 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 431
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = -1
Query: 475 PYSHPQPIXRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTL 338
P HPQ ++P +P+ P+++ L+ + V+ HR L
Sbjct: 47 PLFHPQSPPEPKSLPLSPLSPKSKEEPESQTMTPLMSKHVKTHRNL 92
>At2g33790.1 68415.m04144 pollen Ole e 1 allergen and extensin
family protein similar to arabinogalactan protein
[Daucus carota] GI:11322245, SP|Q03211 Pistil-specific
extensin-like protein precursor (PELP) {Nicotiana
tabacum}; contains Pfam profile PF01190: Pollen proteins
Ole e I family
Length = 239
Score = 29.5 bits (63), Expect = 1.3
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = -1
Query: 481 ALPYSHPQPIXRAPTVP--AAPIPPQARPGQAQPLQAVLLPRAVQVHR--TLPPLR 326
+LP P P + PT+P API A P P++ LP A + TLPP++
Sbjct: 38 SLPQHLPLPPIKLPTLPPAKAPIKLPAYPPAKAPIKLPTLPPAKAPIKLPTLPPIK 93
>At5g07760.1 68418.m00888 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 853
Score = 29.1 bits (62), Expect = 1.7
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -1
Query: 496 IRSQKALPYSHPQPIXRAPTVPAAPIPPQARPG-QAQPLQAVLLPRAVQVHRTLPPLRLV 320
+R + LP P P R +P P PP P A+ L P V+ LPP L+
Sbjct: 48 MRRRAPLP-PPPPPAMRRRVLPRPPPPPPPLPMFDAEVLCCCYPPTRVRREAPLPPPPLI 106
Query: 319 FPG 311
F G
Sbjct: 107 FVG 109
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 490 SQKALPYSHPQPIXRAPTVPAAPIPPQARPG 398
S + PY PQP AP+ PA P P + PG
Sbjct: 24 SYYSAPYQPPQPYAAAPS-PAVPAPVASIPG 53
>At1g13050.1 68414.m01513 expressed protein
Length = 317
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -1
Query: 466 HPQPIXRA-PTVPAAPIPPQARPGQAQPLQ 380
H P R P P P+PP+ P A+PLQ
Sbjct: 65 HESPSSRPLPLRPEEPLPPRHNPNSARPLQ 94
>At5g65410.1 68418.m08226 zinc finger homeobox family protein /
ZF-HD homeobox family protein similar to hypothetical
proteins (GP|4220524)(GP|3184285|)(Arabidopsis); ZP-HD
homeobox family protein GP|13374061 (Flaveria
bidentis);GP:5091602 {Oryza sativa}
Length = 279
Score = 28.7 bits (61), Expect = 2.3
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Frame = -1
Query: 487 QKALPYSHPQPIXRAPTVPA-------APIPPQARPGQAQPLQAVLLP 365
+K LPY H P P P AP+ + P QA PLQ L P
Sbjct: 122 RKELPYFHHAPPQHQPPPPPPGFYRLPAPVSYRPPPSQAPPLQLALPP 169
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 28.7 bits (61), Expect = 2.3
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -1
Query: 472 YSHPQPIXRAPTVPAAPIPPQARP 401
YS P P+ P P P+PP P
Sbjct: 809 YSPPPPVFSPPPKPVTPLPPATSP 832
>At1g75000.1 68414.m08707 GNS1/SUR4 membrane family protein contains
Pfam profile PF01151: GNS1/SUR4 family
Length = 281
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 381 RQFFYLGRFKYIGRFLHFV*CFQESSFRREQTFTQAWSRKNMLC 250
R FF+ F Y+ RFLH F RR+ +F Q ++ ++LC
Sbjct: 125 RVFFWSYAF-YLSRFLHLFRTFFSVIRRRKLSFFQLINQSSLLC 167
>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
family protein similar to arabinogalactan protein
[Daucus carota] GI:11322245; contains Pfam profile
PF01190: Pollen proteins Ole e I family
Length = 359
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -1
Query: 475 PYSHPQPIXRAPTVPA--APIPPQARPGQAQPL 383
P+ HP P ++P P AP+ P A+P P+
Sbjct: 60 PHPHPHPPAKSPVKPPVKAPVSPPAKPPVKPPV 92
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 28.7 bits (61), Expect = 2.3
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -1
Query: 475 PYS-HPQPIXRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQ 353
PYS H P AP P P+PP P Q+ P L R+ Q
Sbjct: 16 PYSPHLHP-PSAPLPPPPPLPPPPPPRQSHPESPNLYGRSTQ 56
>At5g48360.1 68418.m05975 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 782
Score = 27.9 bits (59), Expect = 4.0
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Frame = -1
Query: 475 PYSHPQ-PIXRAPTVPAAPIPPQAR------PGQAQPLQAVLLPRAVQVHRTLPPLRL 323
P S P P+ +P P P+PP P + A++LPR+ + H T P L L
Sbjct: 47 PISPPFFPLESSPPSPPPPLPPTPPTTFAVFPTFPANISALVLPRSSKPHHTSPTLLL 104
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -1
Query: 466 HPQPIXRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQV--HRTLPP 332
HPQ + P +P +PP + PL LPR +Q+ H +PP
Sbjct: 580 HPQQMLPMPNMPHHQLPPSSH----MPLHPHHLPRPMQMPPHGHMPP 622
>At5g61090.1 68418.m07665 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains similarity to vegetative cell wall protein gp1
[Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420;
common family members: At4g18570, At3g25690, At4g04980
[Arabidopsis thaliana]
Length = 344
Score = 27.1 bits (57), Expect = 7.0
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Frame = -1
Query: 475 PYSHPQ-PIXRAPT-VPAAPIPPQARPGQAQPLQAVLLP---RAVQVHRTLPPLR 326
P S P PI P VPA P P RP A+P + P R + +TL P R
Sbjct: 104 PRSVPACPIPEIPRPVPARPTPETPRPVTARPTPEIPRPVPARPISEVQTLVPTR 158
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -1
Query: 463 PQPIXRAPTVPAAPI-PPQARPGQAQPLQAVLLP-RAVQVHRTLPPLRL 323
P P + PT+P PI PP +P P++ +P V+ + PP++L
Sbjct: 55 PTPSYKPPTLPTTPIKPPTTKP----PVKPPTIPVTPVKPPVSTPPIKL 99
>At5g08520.1 68418.m01011 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 298
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -1
Query: 475 PYSHPQPIXRAPTVPAAPIPPQARPGQAQPL--QAVLLPRAVQVHR 344
P + P P A V AAP+P PG A + +PR HR
Sbjct: 253 PVNLPAPPHMAYGVHAAPVPGSVVPGAAMNIGQMPYTMPRTPTAHR 298
>At4g11280.1 68417.m01824 1-aminocyclopropane-1-carboxylate synthase
6 / ACC synthase 6 (ACS6) identical to GI:3746125
Length = 495
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 281 HKPGQGKICFASKTYSIFLTISVRISVFNT 192
H+PG ++CFA+ + T RI VF +
Sbjct: 408 HEPGWFRVCFANMDHKTMETALERIRVFTS 437
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = -1
Query: 475 PYSHPQPIXRAPTVPAAPIPPQARPGQAQPLQAVLLP 365
P P P +PT P +P PP P P V P
Sbjct: 100 PPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPP 136
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = -1
Query: 475 PYSHPQPIXRAPTVPAAPIPPQARPGQAQPLQAVLLP 365
P P P +PT P +P PP P P V P
Sbjct: 118 PPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPP 154
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = -1
Query: 463 PQPIXRAPTVPAAPIPPQARPGQAQPLQAVLLP 365
P P +PT P +P PP P P V P
Sbjct: 86 PTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPP 118
>At3g11000.1 68416.m01328 expressed protein
Length = 488
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -1
Query: 499 RIRSQKALPYSHPQPIXRAPTVPAAPIPPQARPGQAQPLQAV 374
R ++ K L P P R PT+ +PP +P A L +
Sbjct: 130 RGQTNKLLRLFKPSPSVRPPTISRDAVPPPRKPIPASSLAQI 171
>At3g10070.1 68416.m01207 transcription initiation factor IID
(TFIID) subunit A family protein similar to hypothetical
protein GB:CAB10099 [Schizosaccharomyces pombe];
contains Pfam profile PF03847: Transcription initiation
factor TFIID subunit A
Length = 539
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -1
Query: 490 SQKALPYSHPQPIXRAPTVPAAPIP-PQARPGQAQP 386
S +LP S Q A VPA+PIP P P Q P
Sbjct: 125 SSSSLPISGQQRGGMAIGVPASPIPSPSPTPSQHSP 160
>At2g35350.1 68415.m04334 protein phosphatase 2C family protein /
PP2C family protein similar to protein phosphatase-2c
(GI:3608412) [Mesembryanthemum crystallinum]; contains
Pfam PF00481 : Protein phosphatase 2C domain
Length = 783
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 151 NLKHYKEYSKSCLVVLNTDILTEMVRNIEYVFEAKHIFP 267
+L+HY+ +VL++D L + + N+E V A FP
Sbjct: 683 SLRHYRLTENDQFMVLSSDGLYQYLSNVEVVSLAMEKFP 721
>At5g57625.1 68418.m07199 allergen V5/Tpx-1-related family protein
low similarity to SP|Q40374 Pathogenesis-related protein
PR-1 precursor {Medicago truncatula}; contains Pfam
profile PF00188: SCP-like extracellular protein
Length = 207
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 478 LPYSHPQPIXRAPTVPAAPIPPQAR 404
LP P+P+ R PT P+ P AR
Sbjct: 49 LPSPSPKPVYRPPTTPSLPAGSIAR 73
>At5g23150.1 68418.m02707 PWWP domain-containing protein identical to
cDNA putative transcription factor (HUA2) GI:4868119;
contains Pfam profile PF00855: PWWP domain
Length = 1392
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = -1
Query: 478 LPYSHPQPIXRAPTVPAAPIPPQARPGQAQPLQAVLLP 365
LP P P+ P P P PP P A L P
Sbjct: 1064 LPQESPPPLPPLPPSPPPPSPPLPPSSLPPPPPAALFP 1101
>At5g07150.1 68418.m00815 leucine-rich repeat family protein
contains weak similarity to LRR receptor-like protein
kinase [Nicotiana tabacum] gi|7672732|gb|AAF66615;
contains Pfam PF00560 domain Leucine Rich Repeat
Length = 553
Score = 26.6 bits (56), Expect = 9.3
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = -1
Query: 481 ALPYSHPQPIXRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVII 302
A P + Q I VP P P Q P Q P Q +P AV ++ + GV++
Sbjct: 181 ASPPTETQVIPNPSPVP--PPPAQPPPAQTPPPQLSEVPHAVNKKKSHKSKMYIIVGVLV 238
>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
protein [Arabidopsis thaliana] GI:21743571; contains Pfam
profile PF00730: HhH-GPD superfamily base excision DNA
repair protein
Length = 1729
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 463 PQPIXRAPTVPAAPIPPQARPGQAQPLQAVLLP 365
P P R+ T P+PP++ P A P+ + LP
Sbjct: 1402 PAPEERSLTSATIPVPPESYPPVAIPMIELPLP 1434
>At5g04500.1 68418.m00449 glycosyltransferase family protein 47 low
similarity to Exostosin-like 2, Homo sapiens
[SP|Q9UBQ6], EXTL2, Mus musculus [GI:10443633]
Length = 765
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 393 HNHFRQFFYLGRFKYIGRFLHFV*CF 316
HNH ++ Y+ + RFL F CF
Sbjct: 23 HNHHHRYKYISNYGVGRRFLFFASCF 48
>At1g13900.1 68414.m01631 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 656
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 53 SRYKTGAFYVC*LKLNKEKVIVKIVRSH 136
S Y+TG F L NKEK+ V V +H
Sbjct: 540 SMYRTGEFGYTRLVANKEKLTVSFVGNH 567
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,539,793
Number of Sequences: 28952
Number of extensions: 189577
Number of successful extensions: 647
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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