Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0247.Seq
         (379 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|R...    48   8e-05
UniRef50_A0DJ38 Cluster: Chromosome undetermined scaffold_52, wh...    31   5.4  

>UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|Rep:
            Sericin 1 precursor - Bombyx mori (Silk moth)
          Length = 1186

 Score = 47.6 bits (108), Expect = 8e-05
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = -3

Query: 311  GVNRLLHKPGQGKICLCFE 255
            GVNRLLHKPGQGKICLCFE
Sbjct: 1153 GVNRLLHKPGQGKICLCFE 1171



 Score = 32.3 bits (70), Expect = 3.1
 Identities = 13/15 (86%), Positives = 13/15 (86%)
 Frame = -2

Query: 255  NIFDIPYHLRKXXGV 211
            NIFDIPYHLRK  GV
Sbjct: 1172 NIFDIPYHLRKNIGV 1186


>UniRef50_A0DJ38 Cluster: Chromosome undetermined scaffold_52, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_52,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 350

 Score = 31.5 bits (68), Expect = 5.4
 Identities = 12/51 (23%), Positives = 32/51 (62%)
 Frame = -2

Query: 375 RAVQVHRRFLHFV*CFQESSFRREQTFTQAWSRKNMPLLRNIFDIPYHLRK 223
           +AV++H+ ++HF+     ++ +R+    +A  + N  +L+N+ +I +++ K
Sbjct: 164 QAVEIHQSYVHFL-GQHANALKRQNRIEEALEKLNQGILKNLHNICFYIAK 213


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 277,807,435
Number of Sequences: 1657284
Number of extensions: 3973176
Number of successful extensions: 5920
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5919
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14444021678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)