Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0247.Seq
         (379 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0885 - 32488750-32489145,32489372-32490040,32490245-324903...    27   3.7  
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948...    26   8.6  

>02_05_0885 -
           32488750-32489145,32489372-32490040,32490245-32490301,
           32490814-32491152
          Length = 486

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 330 FQESSFRREQTFTQAWSRKNMPLLRNIFDI 241
           FQ++SFR E+  TQ    ++  LLR + D+
Sbjct: 290 FQKASFREEKFRTQMEDTRHAELLRRLIDL 319


>05_06_0132 +
           25893241-25893435,25894266-25894487,25894567-25894863,
           25894944-25895111,25895201-25895368,25895456-25895536,
           25895704-25895770,25895874-25895971,25896587-25896659,
           25896753-25896823,25896919-25896968,25897698-25897810,
           25898182-25898300,25898629-25898721,25899025-25899051,
           25899422-25899823,25900467-25900513,25900612-25900651,
           25900733-25900795,25900881-25901018,25901873-25902031,
           25902111-25902164,25902324-25902392,25902514-25902643,
           25902909-25902949,25903133-25903178,25903200-25903357,
           25903560-25903605,25903702-25903853,25904022-25904243
          Length = 1202

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 370 GSSTSALPPLRLVFPGVII 314
           G ++S LPPL +  PGVII
Sbjct: 91  GGNSSQLPPLDVPLPGVII 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,370,418
Number of Sequences: 37544
Number of extensions: 105172
Number of successful extensions: 158
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)