Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0246.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    28   1.0  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    26   3.2  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    25   5.6  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    25   7.3  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    25   9.7  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    25   9.7  

>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 375 SSRNQYVKRGLLPFF-CPHT*NPHRK 301
           SSRNQ++   LLP++ C     PHRK
Sbjct: 17  SSRNQFIINSLLPWYSCSEHEFPHRK 42


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 405 GTYYQAGGDNDRAVDPAICDKGXGXLQKASDLTAXI*G 518
           G ++ A GD++   DPA  DK  G +  +SDL   I G
Sbjct: 69  GAFFFAVGDDNAVFDPATLDK-FGNMLGSSDLFDDIKG 105


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 390 PSSYLSSRNQYVKRGLLP 337
           P+SYLSS NQY  + + P
Sbjct: 269 PASYLSSPNQYTLKNVSP 286


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 150 SWQQFVVNKLVCYCDVNVPC-SLEQCFVIPMRIDFV*FFG 34
           SWQQF+ + L+C   ++     +E  F+I   ++ V  FG
Sbjct: 259 SWQQFIDSCLLCGTAISPTFPQIEGTFLIKSAMELVRMFG 298


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 58  PHWDDETLFQTARDINIAITNQFVYYE 138
           PHWD ET+F   +  +  + + +  YE
Sbjct: 218 PHWDFETVFDVTKMKSQMVVSVYDKYE 244


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 25  NKIAKELNEINPHWDDETLFQTARDI 102
           N +  EL+E +   DD+ LFQ   DI
Sbjct: 523 NSVEPELSEDHGDLDDQNLFQVFTDI 548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,180,462
Number of Sequences: 5004
Number of extensions: 42651
Number of successful extensions: 91
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)