Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0246.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0182 - 21397221-21397575,21397712-21398076,21398510-213986...    29   1.8  
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689...    29   1.8  
01_05_0180 + 18980059-18980165,18980280-18980378,18982007-189820...    28   5.6  

>09_06_0182 -
           21397221-21397575,21397712-21398076,21398510-21398685,
           21398802-21399039,21399627-21400118
          Length = 541

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 495 RMLFAXFXIPYHKWPGLQLYHYPLQPDSKFLESFLPSSYLSSRNQY 358
           R LFA F   Y+KW  L +  + + PD  F+E+    S +   +++
Sbjct: 303 RWLFAKFVESYYKW-ALPMEKHGMVPDEDFMEAMCSCSVMKLPDKF 347


>09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,
            6899245-6899386,6899951-6900020,6900077-6900216,
            6900291-6900365,6901083-6904723
          Length = 1448

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 426  LQPDSKFLESFLPSSYLSSRNQYVKRGLLPFF 331
            LQPD+  L   L   Y+ + N Y KR L+ FF
Sbjct: 1366 LQPDTVVLYMALHGIYIHAHNYYSKRNLVRFF 1397


>01_05_0180 +
           18980059-18980165,18980280-18980378,18982007-18982069,
           18982622-18982757,18983698-18983881,18984276-18984397,
           18984477-18984617
          Length = 283

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +3

Query: 246 RILLALRWFHLVSEGDLKLFDED-FKYVGKKMVTDLSLHTDFLMRDKNLAKMTRGTYYQA 422
           R+ L++R F L    D K F  + ++ + +    +    +  L  +K  +    GT  QA
Sbjct: 150 RLQLSIRLFSLCPNEDAKNFLRNAYELIERSKKQEALCRSQQLKENKEASDRHNGTEDQA 209

Query: 423 GGDNDRAVD 449
           GG+N  + D
Sbjct: 210 GGNNSDSED 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,746,380
Number of Sequences: 37544
Number of extensions: 251660
Number of successful extensions: 500
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)