Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0246.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   8e-09
SB_47801| Best HMM Match : An_peroxidase (HMM E-Value=0)               50   1e-06
SB_11168| Best HMM Match : An_peroxidase (HMM E-Value=0.15)            50   1e-06
SB_59516| Best HMM Match : An_peroxidase (HMM E-Value=1.5e-11)         48   5e-06
SB_24473| Best HMM Match : An_peroxidase (HMM E-Value=0)               48   7e-06
SB_30681| Best HMM Match : An_peroxidase (HMM E-Value=4.3e-29)         45   5e-05
SB_3866| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.47 
SB_44793| Best HMM Match : ENT (HMM E-Value=3.4)                       31   0.62 
SB_17453| Best HMM Match : HTH_1 (HMM E-Value=8.7e-17)                 30   1.4  
SB_56853| Best HMM Match : BTB (HMM E-Value=1.1e-16)                   27   7.6  
SB_30233| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1565

 Score = 57.2 bits (132), Expect = 8e-09
 Identities = 24/52 (46%), Positives = 33/52 (63%)
 Frame = +1

Query: 10   WWRLHNKIAKELNEINPHWDDETLFQTARDINIAITNQFVYYELLPTLFGEE 165
            W R HN+IA++L E+N HWDD+T++Q AR I  A      Y E LP + G +
Sbjct: 923  WVREHNRIARQLYELNRHWDDDTIYQEARKIVGAELQHITYTEFLPKILGPD 974


>SB_47801| Best HMM Match : An_peroxidase (HMM E-Value=0)
          Length = 1263

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
 Frame = +1

Query: 10   WWRLHNKIAKELNEINPHWDDETLFQTARDINIAITNQFVYYELLPTLFG-EEFC-LKNE 183
            W R HN I  E+    P  DDETLFQ AR +  A   + V+ E LPT+ G EEF  L   
Sbjct: 922  WSREHNHICDEIRARTPDMDDETLFQHARALTRAKWQKIVWEEYLPTVIGSEEFARLGKY 981

Query: 184  LIHSESGHRDLYDESIPATY 243
              ++ S H  +++E   A +
Sbjct: 982  QGYNSSIHVGIFNEFSTAAF 1001


>SB_11168| Best HMM Match : An_peroxidase (HMM E-Value=0.15)
          Length = 161

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
 Frame = +1

Query: 10  WWRLHNKIAKELNEINPHWDDETLFQTARDINIAITNQFVYYELLPTLFG-EEFC-LKNE 183
           W R HN I  E+    P  DDETLFQ AR +  A   + V+ E LPT+ G EEF  L   
Sbjct: 81  WSREHNHICDEIRARTPDMDDETLFQHARALTRAKWQKIVWEEYLPTVIGSEEFARLGKY 140

Query: 184 LIHSESGHRDLYDESIPATY 243
             ++ S H  +++E   A +
Sbjct: 141 QGYNSSIHVGIFNEFSTAAF 160


>SB_59516| Best HMM Match : An_peroxidase (HMM E-Value=1.5e-11)
          Length = 359

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 22/49 (44%), Positives = 28/49 (57%)
 Frame = +1

Query: 16  RLHNKIAKELNEINPHWDDETLFQTARDINIAITNQFVYYELLPTLFGE 162
           R HN+IA EL ++N HW  + +FQ AR I  A      Y E LP +F E
Sbjct: 309 REHNRIATELKKLNRHWSPDKVFQEARKIVGAQIQHITYNEFLPLIFNE 357


>SB_24473| Best HMM Match : An_peroxidase (HMM E-Value=0)
          Length = 647

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 20/50 (40%), Positives = 27/50 (54%)
 Frame = +1

Query: 10  WWRLHNKIAKELNEINPHWDDETLFQTARDINIAITNQFVYYELLPTLFG 159
           W R HN+IA EL+ +NPHW  E ++  AR I  A      Y   +P + G
Sbjct: 389 WMREHNRIASELSRLNPHWTGEKIYHEARKIVGAQLQHITYSAWIPKIVG 438


>SB_30681| Best HMM Match : An_peroxidase (HMM E-Value=4.3e-29)
          Length = 576

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 22/72 (30%), Positives = 35/72 (48%)
 Frame = +1

Query: 16  RLHNKIAKELNEINPHWDDETLFQTARDINIAITNQFVYYELLPTLFGEEFCLKNELIHS 195
           R HN+I+ EL ++N HW  + L+   R I IA      Y E LPT+       +  L+  
Sbjct: 437 REHNRISSELKKLNQHWTTDKLYLETRKIVIAELQHITYNEFLPTILDTRTRSRYGLVLR 496

Query: 196 ESGHRDLYDESI 231
           + G    Y+ ++
Sbjct: 497 KRGFYKNYNAAV 508


>SB_3866| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1178

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 237 YLSRILLALRWFHLVSEGDLKLFDEDFKYVGKKMVT 344
           Y SR ++ L W +  S  +LK  D+ +KY   K VT
Sbjct: 240 YFSRTMMLLHWANWFSLDELKFADDTWKYAFPKFVT 275


>SB_44793| Best HMM Match : ENT (HMM E-Value=3.4)
          Length = 305

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 306 DEDFKYVGKKMVTDLSLHTDFLMRDKNLAKMTRGTYY 416
           DE+ K +  K+VTD ++HTDF++ +  +   TR   Y
Sbjct: 211 DEETKEILMKIVTDSTVHTDFVIENFRIRPNTRIVAY 247


>SB_17453| Best HMM Match : HTH_1 (HMM E-Value=8.7e-17)
          Length = 136

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 20/73 (27%), Positives = 34/73 (46%)
 Frame = +1

Query: 31  IAKELNEINPHWDDETLFQTARDINIAITNQFVYYELLPTLFGEEFCLKNELIHSESGHR 210
           ++ +L+++        + ++ R +NI    Q  YY     L  E   L++EL+ S    R
Sbjct: 33  LSTQLSQLESALGVRLINRSTRSLNITAAGQH-YYSKAKQLLNEIAQLESELVASSDRCR 91

Query: 211 DLYDESIPATYLE 249
            L   SIP T+ E
Sbjct: 92  GLLRISIPTTFGE 104


>SB_56853| Best HMM Match : BTB (HMM E-Value=1.1e-16)
          Length = 605

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = -3

Query: 447 LQLYHYPLQPDSKFLESFLPSSYLSSRNQYVKRGLLPFFCPHT*NPHRKVSNHPLKP-SG 271
           + L  +PL   S+F+   +PS +LS  +  V + +L +  P      +K  N   +P SG
Sbjct: 401 MALIRFPLMKQSEFINQVVPSGFLSPDD--VTQIMLGYVTP------QKACNFSSQPRSG 452

Query: 270 TISKXVVFEISSRYRL 223
            I +   F+ + R+ L
Sbjct: 453 PIKRCARFQSTERWFL 468


>SB_30233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -3

Query: 285 LKPSGTISKXVVFEISSRYRLIIKVSVSRFRVNQLIF 175
           L+   T+S  ++  I  R  +IIK ++SRF  N+++F
Sbjct: 278 LQTQPTVSPTLIHHIQ-RTNIIIKPNISRFEENKVVF 313


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,016,788
Number of Sequences: 59808
Number of extensions: 301311
Number of successful extensions: 617
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)