Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0246.Seq
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   3.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.6  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   6.2  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 475 PNPLSQMAGSTALSLSPPA 419
           PNP    A S++ S SPPA
Sbjct: 513 PNPRIASAPSSSTSSSPPA 531


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 429 PLQPDSKFLESFLPSSYLSS 370
           P+QP  +    FLP SY+S+
Sbjct: 819 PMQPPQQNPYMFLPVSYMST 838


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 78  CFVIPMRIDFV*FF 37
           CFVIP+ + F+ FF
Sbjct: 228 CFVIPIMLLFLAFF 241


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,977
Number of Sequences: 438
Number of extensions: 2799
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)