Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0246.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73680.1 68414.m08532 pathogen-responsive alpha-dioxygenase, ...    31   0.38 
At4g33790.1 68417.m04796 acyl CoA reductase, putative similar to...    28   4.7  
At3g13760.1 68416.m01736 DC1 domain-containing protein contains ...    27   6.2  
At1g22060.1 68414.m02759 expressed protein                             27   8.3  

>At1g73680.1 68414.m08532 pathogen-responsive alpha-dioxygenase,
           putative similar to pathogen-inducible alpha-dioxygenase
           [Nicotiana attenuata] GI:12539609; contains Pfam profile
           PF03098: Animal haem peroxidase
          Length = 631

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 22  HNKIAKELNEINPHWDDETLFQTARDINIAI 114
           HN +   L E  P +DDE L++TAR +  A+
Sbjct: 275 HNSVCDMLKERYPDFDDEKLYRTARLVTAAV 305


>At4g33790.1 68417.m04796 acyl CoA reductase, putative similar to
           acyl CoA reductase [Simmondsia chinensis] GI:5020215;
           contains Pfam profile PF03015: Male sterility protein;
           No start codon identified, may contain anomalous
           splicing at 5' end.
          Length = 380

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +3

Query: 246 RILLALRWFHLVSEGDLKLFDEDFKYVGKKM 338
           R L+AL+   LV+    KLF+++F+Y  KK+
Sbjct: 282 RYLIALKGLELVNIILCKLFEKEFQYFNKKI 312


>At3g13760.1 68416.m01736 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 139 LLPTLFGEEFCLKNE-LIHSESGHRDLYDESIPATYLEY 252
           L+P L  EE  +K E +IH+++  +++YD   P   L +
Sbjct: 8   LIPHLMMEEPTVKEEDIIHNQTSTKEMYDAEKPRCLLSH 46


>At1g22060.1 68414.m02759 expressed protein
          Length = 1999

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 52   INPHWDDETLFQTARDIN 105
            +  H DDE +FQ+ RDIN
Sbjct: 1911 LKQHTDDEAIFQSFRDIN 1928


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,308,771
Number of Sequences: 28952
Number of extensions: 215391
Number of successful extensions: 492
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)